MiMeDB: Showing metabocard for Cinnamoylglycine (MMDBc0000451)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2020-12-10 18:38:03 UTC

Update Date

2024-04-30 19:32:27 UTC

Metabolite ID

MMDBc0000451

Metabolite Identification

Common Name

Cinnamoylglycine

Description

Cinnamoylglycine is known as a urinary metabolite in man (PMID 649712 ) although whether it is formed de novo from plant cinnamate or is a plant product excreted. unchanged has not been conclusively demonstrated. When cinnamoylglycine occurs naturally it is probably a food constituent excreted unchanged. It is not found when small quantities (0.5-6 g) of cinnamic acid are fed to man, but by analogy with animal experiments may be produced when much larger quantities are given. (PMID 6743769 ).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652309121709222D          

 15 15  0  0  0  0            999 V2000
   -2.1434    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    3.7125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  1  6  1  0  0  0  0
  4  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0000451

> <DATABASE_NAME>
MIME

> <SMILES>
OC(=O)CNC(=O)\C=C\C1=CC=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C11H11NO3/c13-10(12-8-11(14)15)7-6-9-4-2-1-3-5-9/h1-7H,8H2,(H,12,13)(H,14,15)/b7-6+

> <INCHI_KEY>
YAADMLWHGMUGQL-VOTSOKGWSA-N

> <FORMULA>
C11H11NO3

> <MOLECULAR_WEIGHT>
205.2099

> <EXACT_MASS>
205.073893223

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
26

> <JCHEM_AVERAGE_POLARIZABILITY>
21.164321766371767

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-[(2E)-3-phenylprop-2-enamido]acetic acid

> <ALOGPS_LOGP>
1.42

> <JCHEM_LOGP>
1.030803020333333

> <ALOGPS_LOGS>
-2.93

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
15.718884571874998

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.9010068308625008

> <JCHEM_PKA_STRONGEST_BASIC>
-0.7101446007294613

> <JCHEM_POLAR_SURFACE_AREA>
66.4

> <JCHEM_REFRACTIVITY>
55.8634

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.42e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(2E)-3-phenylprop-2-enamido]acetic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-SEP-17   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-SEP-17         0                                  
HETATM    1  C   UNK     0      -4.001   5.390   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -4.001   6.930   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.667   7.700   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.334   6.930   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.334   5.390   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.667   4.620   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.000   7.700   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.334   6.930   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.667   7.700   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       2.667   9.240   0.000  0.00  0.00           O+0
HETATM   11  N   UNK     0       4.001   6.930   0.000  0.00  0.00           N+0
HETATM   12  C   UNK     0       5.335   7.700   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.668   6.930   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       8.002   7.700   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0       6.668   5.390   0.000  0.00  0.00           O+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    7                                                  
CONECT    5    4    6                                                       
CONECT    6    5    1                                                       
CONECT    7    4    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13                                                            
MASTER        0    0    0    0    0    0    0    0   15    0   30    0
END

COMPND    HMDB0011621
HETATM    1  O1  UNL     1       4.002   0.906   1.433  1.00  0.00           O  
HETATM    2  C1  UNL     1       4.557   0.231   0.531  1.00  0.00           C  
HETATM    3  O2  UNL     1       5.946   0.153   0.556  1.00  0.00           O  
HETATM    4  C2  UNL     1       3.846  -0.476  -0.538  1.00  0.00           C  
HETATM    5  N1  UNL     1       2.415  -0.289  -0.413  1.00  0.00           N  
HETATM    6  C3  UNL     1       1.502  -0.867  -1.320  1.00  0.00           C  
HETATM    7  O3  UNL     1       1.970  -1.573  -2.273  1.00  0.00           O  
HETATM    8  C4  UNL     1       0.053  -0.728  -1.264  1.00  0.00           C  
HETATM    9  C5  UNL     1      -0.567  -0.032  -0.339  1.00  0.00           C  
HETATM   10  C6  UNL     1      -2.010   0.116  -0.270  1.00  0.00           C  
HETATM   11  C7  UNL     1      -2.556   0.878   0.756  1.00  0.00           C  
HETATM   12  C8  UNL     1      -3.907   1.086   0.919  1.00  0.00           C  
HETATM   13  C9  UNL     1      -4.786   0.514   0.025  1.00  0.00           C  
HETATM   14  C10 UNL     1      -4.279  -0.247  -1.003  1.00  0.00           C  
HETATM   15  C11 UNL     1      -2.907  -0.441  -1.144  1.00  0.00           C  
HETATM   16  H1  UNL     1       6.548   0.963   0.448  1.00  0.00           H  
HETATM   17  H2  UNL     1       4.223  -0.084  -1.516  1.00  0.00           H  
HETATM   18  H3  UNL     1       4.045  -1.585  -0.468  1.00  0.00           H  
HETATM   19  H4  UNL     1       2.055   0.287   0.368  1.00  0.00           H  
HETATM   20  H5  UNL     1      -0.590  -1.207  -2.004  1.00  0.00           H  
HETATM   21  H6  UNL     1       0.065   0.459   0.418  1.00  0.00           H  
HETATM   22  H7  UNL     1      -1.889   1.334   1.467  1.00  0.00           H  
HETATM   23  H8  UNL     1      -4.335   1.678   1.716  1.00  0.00           H  
HETATM   24  H9  UNL     1      -5.866   0.661   0.129  1.00  0.00           H  
HETATM   25  H10 UNL     1      -4.986  -0.689  -1.698  1.00  0.00           H  
HETATM   26  H11 UNL     1      -2.553  -1.046  -1.966  1.00  0.00           H  
CONECT    1    2    2
CONECT    2    3    4
CONECT    3   16
CONECT    4    5   17   18
CONECT    5    6   19
CONECT    6    7    7    8
CONECT    8    9    9   20
CONECT    9   10   21
CONECT   10   11   11   15
CONECT   11   12   22
CONECT   12   13   13   23
CONECT   13   14   24
CONECT   14   15   15   25
CONECT   15   26
END

Synonyms

Value	Source
N-(1-oxo-3-Phenyl-2-propenyl)-glycine	ChEBI
N-Cinnamylglycine	ChEBI
N-(1-oxo-3-Phenyl-2-propen-1-yl)-glycine	HMDB
N-Cinnamoyl-glycine	HMDB
N-Cinnamoylglycine	HMDB
Cinnamoylglycine	MeSH

Molecular Formula

C₁₁H₁₁NO₃

Average Mass

205.2099

Monoisotopic Mass

205.073893223

IUPAC Name

2-[(2E)-3-phenylprop-2-enamido]acetic acid

Traditional Name

[(2E)-3-phenylprop-2-enamido]acetic acid

CAS Registry Number

Not Available

SMILES

OC(=O)CNC(=O)\C=C\C1=CC=CC=C1

InChI Identifier

InChI=1S/C11H11NO3/c13-10(12-8-11(14)15)7-6-9-4-2-1-3-5-9/h1-7H,8H2,(H,12,13)(H,14,15)/b7-6+

InChI Key

YAADMLWHGMUGQL-VOTSOKGWSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as n-acyl-alpha amino acids. N-acyl-alpha amino acids are compounds containing an alpha amino acid which bears an acyl group at its terminal nitrogen atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

N-acyl-alpha amino acids

Alternative Parents

Substituents

N-acyl-alpha-amino acid
Cinnamic acid amide
Cinnamic acid or derivatives
Styrene
Monocyclic benzene moiety
Benzenoid
Carboxamide group
Secondary carboxylic acid amide
Carboxylic acid
Monocarboxylic acid or derivatives
Hydrocarbon derivative
Organic nitrogen compound
Organic oxide
Organopnictogen compound
Organic oxygen compound
Carbonyl group
Organonitrogen compound
Organooxygen compound
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

N-acylglycine (CHEBI:68616 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.24 g/L	ALOGPS
logP	1.42	ALOGPS
logP	1.03	ChemAxon
logS	-2.9	ALOGPS
pKa (Strongest Acidic)	3.9	ChemAxon
pKa (Strongest Basic)	-0.71	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	66.4 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	55.86 m³·mol⁻¹	ChemAxon
Polarizability	21.16 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Blood
Urine

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Actinobacteria	1	Human vaginal fluid; Human feces	Indirect association between microbiota composition and metabolites measured in host biospecimen
Bacteria/Eubacteria	Firmicutes	4	Human stool; Human ; Human feces; Human urine; Human sputum	Indirect association between microbiota composition and metabolites measured in host biospecimen

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Age	Sex	Health Condition	Data Source	Reference
Human Blood	Detected but not Quantified	Adult (>18 years old)	Both	Normal	HMDB	21784895
Human Blood	Detected but not Quantified	Adult (>18 years old)	Both	Normal	HMDB	25762808
Human Urine	Detected but not Quantified	Adult (>18 years old)	Both	Normal	HMDB	32966057
Human Blood	Detected but not Quantified	Adult (>18 years old)	Both	Normal	HMDB	32966057

External Links

HMDB ID

HMDB0011621

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB028325

KNApSAcK ID

Not Available

Chemspider ID

618829

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

709625

PDB ID

Not Available

ChEBI ID

68616

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Brown GK, Stokke O, Jellum E: Chromatographic profile of high boiling point organic acids in human urine. J Chromatogr. 1978 Mar 1;145(2):177-84. doi: 10.1016/s0378-4347(00)81337-7. [PubMed:649712 ]
Hoskins JA, Holliday SB, Greenway AM: The metabolism of cinnamic acid by healthy and phenylketonuric adults: a kinetic study. Biomed Mass Spectrom. 1984 Jun;11(6):296-300. doi: 10.1002/bms.1200110609. [PubMed:6743769 ]

Showing metabocard for Cinnamoylglycine (MMDBc0000451)

MOL for #<Metabolite:0x00007f923c74aec0>

3D MOL for #<Metabolite:0x00007f923c74aec0>

3D SDF for #<Metabolite:0x00007f923c74aec0>

3D-SDF for #<Metabolite:0x00007f923c74aec0>

PDB for #<Metabolite:0x00007f923c74aec0>

3D PDB for #<Metabolite:0x00007f923c74aec0>

SMILES for #<Metabolite:0x00007f923c74aec0>

INCHI for #<Metabolite:0x00007f923c74aec0>

Structure for #<Metabolite:0x00007f923c74aec0>

3D Structure for #<Metabolite:0x00007f923c74aec0>