MiMeDB: Showing metabocard for Nigerone (MMDBc0003715)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-05-14 21:37:44 UTC

Update Date

2024-04-30 19:33:52 UTC

Metabolite ID

MMDBc0003715

Metabolite Identification

Common Name

Nigerone

Description

Nigerone is produced by Aspergillus niger. Mycotoxin.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv0541 05061307092D          

 42 47  0  0  0  0            999 V2000
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 42 32  1  0  0  0  0
M  END

HMDB0033496
     RDKit          3D
Nigerone
 68 73  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv0541 05061307092D          

 42 47  0  0  0  0            999 V2000
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 22 12  2  0  0  0  0
 23 17  2  0  0  0  0
 23 21  1  0  0  0  0
 24 18  2  0  0  0  0
 24 22  1  0  0  0  0
 25 17  1  0  0  0  0
 26 18  1  0  0  0  0
 26 25  1  0  0  0  0
 27 19  1  0  0  0  0
 28 20  1  0  0  0  0
 29 23  1  0  0  0  0
 29 27  2  0  0  0  0
 30 24  1  0  0  0  0
 30 28  2  0  0  0  0
 31 25  2  0  0  0  0
 31 27  1  0  0  0  0
 32 26  2  0  0  0  0
 32 28  1  0  0  0  0
 33 19  2  0  0  0  0
 34 20  2  0  0  0  0
 35 29  1  0  0  0  0
 36 30  1  0  0  0  0
 37  3  1  0  0  0  0
 37 15  1  0  0  0  0
 38  4  1  0  0  0  0
 38 16  1  0  0  0  0
 39  5  1  0  0  0  0
 39 21  1  0  0  0  0
 40  6  1  0  0  0  0
 40 22  1  0  0  0  0
 41 13  1  0  0  0  0
 41 31  1  0  0  0  0
 42 14  1  0  0  0  0
 42 32  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0003715

> <DATABASE_NAME>
MIME

> <SMILES>
COC1=CC2=C(C(O)=C3C(=O)C=C(C)OC3=C2C2=C3OC(C)=CC(=O)C3=C(O)C3=C2C=C(OC)C=C3OC)C(OC)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C32H26O10/c1-13-7-19(33)27-29(35)23-17(9-15(37-3)11-21(23)39-5)25(31(27)41-13)26-18-10-16(38-4)12-22(40-6)24(18)30(36)28-20(34)8-14(2)42-32(26)28/h7-12,35-36H,1-6H3

> <INCHI_KEY>
MBDIPBHBEVOYQB-UHFFFAOYSA-N

> <FORMULA>
C32H26O10

> <MOLECULAR_WEIGHT>
570.5428

> <EXACT_MASS>
570.152597052

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_AVERAGE_POLARIZABILITY>
58.431525549337394

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
5-hydroxy-10-{5-hydroxy-6,8-dimethoxy-2-methyl-4-oxo-4H-benzo[g]chromen-10-yl}-6,8-dimethoxy-2-methyl-4H-benzo[g]chromen-4-one

> <ALOGPS_LOGP>
4.24

> <JCHEM_LOGP>
5.4582238919999995

> <ALOGPS_LOGS>
-5.11

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
8.335808422588265

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.6538549729183805

> <JCHEM_PKA_STRONGEST_BASIC>
-4.253959458500679

> <JCHEM_POLAR_SURFACE_AREA>
129.98000000000002

> <JCHEM_REFRACTIVITY>
156.00759999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.39e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-hydroxy-10-{5-hydroxy-6,8-dimethoxy-2-methyl-4-oxobenzo[g]chromen-10-yl}-6,8-dimethoxy-2-methylbenzo[g]chromen-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0033496
     RDKit          3D
Nigerone
 68 73  0  0  0  0  0  0  0  0999 V2000
    2.4279   -3.1459    4.1774 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6249   -2.3335    3.3760 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0760   -1.6641    2.2517 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3883   -1.7650    1.8457 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8412   -1.1010    0.7281 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1591   -1.2476    0.3838 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0921   -2.0198    1.0748 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9548   -0.3293    0.0184 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3602    0.3519   -1.1034 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6217    0.3197   -1.5843 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4321    1.1311   -1.8062 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8539    1.8110   -2.9331 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0385    1.7324   -3.3171 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9192    2.5688   -3.6033 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6026    2.6228   -3.1298 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3557    3.4455   -3.8809 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2577    1.9536   -2.0500 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1302    1.2154   -1.3813 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6919    0.5450   -0.2609 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6954    0.6575    0.1601 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6439   -0.2377   -0.3161 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2106   -1.2152   -1.1884 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0952   -2.1440   -1.7064 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6394   -3.1226   -2.5849 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5301   -4.0803   -3.1240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4109   -2.0616   -1.3262 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9002   -1.0883   -0.4438 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2399   -1.0610   -0.1011 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0928   -2.0347   -0.6621 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9806   -0.1883    0.0432 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3696    0.8034    0.9160 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6422    0.9794    1.3595 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4094    1.7207    1.4069 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8338    2.7059    2.2831 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0372    2.8072    2.6513 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8813    3.5882    2.7483 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5756    3.4717    2.3437 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4563    4.4222    2.8435 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2199    2.5234    1.5130 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1053    1.6474    1.0366 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6229   -0.2145    0.4133 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1947   -0.8868    1.5320 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5925   -4.1524    3.7530 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8881   -3.3112    5.1475 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4025   -2.7078    4.4383 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1056   -2.3791    2.4055 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0708   -1.8715    2.1655 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0062   -3.1172    0.8622 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1087   -1.7056    0.7129 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4577   -0.0750   -1.3808 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2114    3.1046   -4.4744 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0573    3.9388   -3.1692 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8888    2.8617   -4.6544 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1794    4.2683   -4.4064 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1696   -1.2650   -1.4771 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1330   -3.5806   -3.9041 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2199   -4.4773   -2.3221 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9915   -4.9757   -3.4994 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1274   -2.7595   -1.7030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7977   -3.0501   -0.3202 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1453   -1.8994   -0.3197 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0377   -2.0475   -1.7732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4817    0.5454    1.2196 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1470    4.3671    3.4243 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2573    3.8688    3.3738 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0224    5.1812    3.4989 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8760    4.9500    1.9576 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1406   -0.7940    1.8417 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  5  8  2  0
  8  9  1  0
  9 10  1  0
  9 11  2  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  2  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 23 26  2  0
 26 27  1  0
 27 28  1  0
 28 29  1  0
 27 30  2  0
 30 31  1  0
 31 32  1  0
 31 33  2  0
 33 34  1  0
 34 35  2  0
 34 36  1  0
 36 37  2  0
 37 38  1  0
 37 39  1  0
 39 40  1  0
 19 41  1  0
 41 42  2  0
 42  3  1  0
 41  8  1  0
 18 11  1  0
 40 20  2  0
 30 21  1  0
 40 33  1  0
  1 43  1  0
  1 44  1  0
  1 45  1  0
  4 46  1  0
  7 47  1  0
  7 48  1  0
  7 49  1  0
 10 50  1  0
 14 51  1  0
 16 52  1  0
 16 53  1  0
 16 54  1  0
 22 55  1  0
 25 56  1  0
 25 57  1  0
 25 58  1  0
 26 59  1  0
 29 60  1  0
 29 61  1  0
 29 62  1  0
 32 63  1  0
 36 64  1  0
 38 65  1  0
 38 66  1  0
 38 67  1  0
 42 68  1  0
M  END

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0      10.669   0.000   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      12.003   2.310   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.668   6.930   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.336  -2.310   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.336   3.850   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.336  -0.770   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       9.336   2.310   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       8.002  -3.080   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.667   4.620   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.002   4.620   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       6.668   3.850   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       4.001   3.850   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       5.335   4.620   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       8.002  -4.620   0.000  0.00  0.00           O+0
HETATM   34  O   UNK     0       2.667   6.160   0.000  0.00  0.00           O+0
HETATM   35  O   UNK     0       5.335  -4.620   0.000  0.00  0.00           O+0
HETATM   36  O   UNK     0       5.335   6.160   0.000  0.00  0.00           O+0
HETATM   37  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   38  O   UNK     0      10.669   1.540   0.000  0.00  0.00           O+0
HETATM   39  O   UNK     0       2.667  -4.620   0.000  0.00  0.00           O+0
HETATM   40  O   UNK     0       8.002   6.160   0.000  0.00  0.00           O+0
HETATM   41  O   UNK     0       8.002   0.000   0.000  0.00  0.00           O+0
HETATM   42  O   UNK     0       2.667   1.540   0.000  0.00  0.00           O+0
CONECT    1   13                                                            
CONECT    2   14                                                            
CONECT    3   37                                                            
CONECT    4   38                                                            
CONECT    5   39                                                            
CONECT    6   40                                                            
CONECT    7   13   19                                                       
CONECT    8   14   20                                                       
CONECT    9   15   17                                                       
CONECT   10   16   18                                                       
CONECT   11   15   21                                                       
CONECT   12   16   22                                                       
CONECT   13    1    7   41                                                  
CONECT   14    2    8   42                                                  
CONECT   15    9   11   37                                                  
CONECT   16   10   12   38                                                  
CONECT   17    9   23   25                                                  
CONECT   18   10   24   26                                                  
CONECT   19    7   27   33                                                  
CONECT   20    8   28   34                                                  
CONECT   21   11   23   39                                                  
CONECT   22   12   24   40                                                  
CONECT   23   17   21   29                                                  
CONECT   24   18   22   30                                                  
CONECT   25   17   26   31                                                  
CONECT   26   18   25   32                                                  
CONECT   27   19   29   31                                                  
CONECT   28   20   30   32                                                  
CONECT   29   23   27   35                                                  
CONECT   30   24   28   36                                                  
CONECT   31   25   27   41                                                  
CONECT   32   26   28   42                                                  
CONECT   33   19                                                            
CONECT   34   20                                                            
CONECT   35   29                                                            
CONECT   36   30                                                            
CONECT   37    3   15                                                       
CONECT   38    4   16                                                       
CONECT   39    5   21                                                       
CONECT   40    6   22                                                       
CONECT   41   13   31                                                       
CONECT   42   14   32                                                       
MASTER        0    0    0    0    0    0    0    0   42    0   94    0
END

COMPND    HMDB0033496
HETATM    1  C1  UNL     1       2.428  -3.146   4.177  1.00  0.00           C  
HETATM    2  O1  UNL     1       1.625  -2.334   3.376  1.00  0.00           O  
HETATM    3  C2  UNL     1       2.076  -1.664   2.252  1.00  0.00           C  
HETATM    4  C3  UNL     1       3.388  -1.765   1.846  1.00  0.00           C  
HETATM    5  C4  UNL     1       3.841  -1.101   0.728  1.00  0.00           C  
HETATM    6  O2  UNL     1       5.159  -1.248   0.384  1.00  0.00           O  
HETATM    7  C5  UNL     1       6.092  -2.020   1.075  1.00  0.00           C  
HETATM    8  C6  UNL     1       2.955  -0.329   0.018  1.00  0.00           C  
HETATM    9  C7  UNL     1       3.360   0.352  -1.103  1.00  0.00           C  
HETATM   10  O3  UNL     1       4.622   0.320  -1.584  1.00  0.00           O  
HETATM   11  C8  UNL     1       2.432   1.131  -1.806  1.00  0.00           C  
HETATM   12  C9  UNL     1       2.854   1.811  -2.933  1.00  0.00           C  
HETATM   13  O4  UNL     1       4.039   1.732  -3.317  1.00  0.00           O  
HETATM   14  C10 UNL     1       1.919   2.569  -3.603  1.00  0.00           C  
HETATM   15  C11 UNL     1       0.603   2.623  -3.130  1.00  0.00           C  
HETATM   16  C12 UNL     1      -0.356   3.445  -3.881  1.00  0.00           C  
HETATM   17  O5  UNL     1       0.258   1.954  -2.050  1.00  0.00           O  
HETATM   18  C13 UNL     1       1.130   1.215  -1.381  1.00  0.00           C  
HETATM   19  C14 UNL     1       0.692   0.545  -0.261  1.00  0.00           C  
HETATM   20  C15 UNL     1      -0.695   0.657   0.160  1.00  0.00           C  
HETATM   21  C16 UNL     1      -1.644  -0.238  -0.316  1.00  0.00           C  
HETATM   22  C17 UNL     1      -1.211  -1.215  -1.188  1.00  0.00           C  
HETATM   23  C18 UNL     1      -2.095  -2.144  -1.706  1.00  0.00           C  
HETATM   24  O6  UNL     1      -1.639  -3.123  -2.585  1.00  0.00           O  
HETATM   25  C19 UNL     1      -2.530  -4.080  -3.124  1.00  0.00           C  
HETATM   26  C20 UNL     1      -3.411  -2.062  -1.326  1.00  0.00           C  
HETATM   27  C21 UNL     1      -3.900  -1.088  -0.444  1.00  0.00           C  
HETATM   28  O7  UNL     1      -5.240  -1.061  -0.101  1.00  0.00           O  
HETATM   29  C22 UNL     1      -6.093  -2.035  -0.662  1.00  0.00           C  
HETATM   30  C23 UNL     1      -2.981  -0.188   0.043  1.00  0.00           C  
HETATM   31  C24 UNL     1      -3.370   0.803   0.916  1.00  0.00           C  
HETATM   32  O8  UNL     1      -4.642   0.979   1.360  1.00  0.00           O  
HETATM   33  C25 UNL     1      -2.409   1.721   1.407  1.00  0.00           C  
HETATM   34  C26 UNL     1      -2.834   2.706   2.283  1.00  0.00           C  
HETATM   35  O9  UNL     1      -4.037   2.807   2.651  1.00  0.00           O  
HETATM   36  C27 UNL     1      -1.881   3.588   2.748  1.00  0.00           C  
HETATM   37  C28 UNL     1      -0.576   3.472   2.344  1.00  0.00           C  
HETATM   38  C29 UNL     1       0.456   4.422   2.843  1.00  0.00           C  
HETATM   39  O10 UNL     1      -0.220   2.523   1.513  1.00  0.00           O  
HETATM   40  C30 UNL     1      -1.105   1.647   1.037  1.00  0.00           C  
HETATM   41  C31 UNL     1       1.623  -0.215   0.413  1.00  0.00           C  
HETATM   42  C32 UNL     1       1.195  -0.887   1.532  1.00  0.00           C  
HETATM   43  H1  UNL     1       2.593  -4.152   3.753  1.00  0.00           H  
HETATM   44  H2  UNL     1       1.888  -3.311   5.147  1.00  0.00           H  
HETATM   45  H3  UNL     1       3.403  -2.708   4.438  1.00  0.00           H  
HETATM   46  H4  UNL     1       4.106  -2.379   2.405  1.00  0.00           H  
HETATM   47  H5  UNL     1       6.071  -1.871   2.165  1.00  0.00           H  
HETATM   48  H6  UNL     1       6.006  -3.117   0.862  1.00  0.00           H  
HETATM   49  H7  UNL     1       7.109  -1.706   0.713  1.00  0.00           H  
HETATM   50  H8  UNL     1       5.458  -0.075  -1.381  1.00  0.00           H  
HETATM   51  H9  UNL     1       2.211   3.105  -4.474  1.00  0.00           H  
HETATM   52  H10 UNL     1      -1.057   3.939  -3.169  1.00  0.00           H  
HETATM   53  H11 UNL     1      -0.889   2.862  -4.654  1.00  0.00           H  
HETATM   54  H12 UNL     1       0.179   4.268  -4.406  1.00  0.00           H  
HETATM   55  H13 UNL     1      -0.170  -1.265  -1.477  1.00  0.00           H  
HETATM   56  H14 UNL     1      -3.133  -3.581  -3.904  1.00  0.00           H  
HETATM   57  H15 UNL     1      -3.220  -4.477  -2.322  1.00  0.00           H  
HETATM   58  H16 UNL     1      -1.992  -4.976  -3.499  1.00  0.00           H  
HETATM   59  H17 UNL     1      -4.127  -2.759  -1.703  1.00  0.00           H  
HETATM   60  H18 UNL     1      -5.798  -3.050  -0.320  1.00  0.00           H  
HETATM   61  H19 UNL     1      -7.145  -1.899  -0.320  1.00  0.00           H  
HETATM   62  H20 UNL     1      -6.038  -2.047  -1.773  1.00  0.00           H  
HETATM   63  H21 UNL     1      -5.482   0.545   1.220  1.00  0.00           H  
HETATM   64  H22 UNL     1      -2.147   4.367   3.424  1.00  0.00           H  
HETATM   65  H23 UNL     1       1.257   3.869   3.374  1.00  0.00           H  
HETATM   66  H24 UNL     1       0.022   5.181   3.499  1.00  0.00           H  
HETATM   67  H25 UNL     1       0.876   4.950   1.958  1.00  0.00           H  
HETATM   68  H26 UNL     1       0.141  -0.794   1.842  1.00  0.00           H  
CONECT    1    2   43   44   45
CONECT    2    3
CONECT    3    4    4   42
CONECT    4    5   46
CONECT    5    6    8    8
CONECT    6    7
CONECT    7   47   48   49
CONECT    8    9   41
CONECT    9   10   11   11
CONECT   10   50
CONECT   11   12   18
CONECT   12   13   13   14
CONECT   14   15   15   51
CONECT   15   16   17
CONECT   16   52   53   54
CONECT   17   18
CONECT   18   19   19
CONECT   19   20   41
CONECT   20   21   40   40
CONECT   21   22   22   30
CONECT   22   23   55
CONECT   23   24   26   26
CONECT   24   25
CONECT   25   56   57   58
CONECT   26   27   59
CONECT   27   28   30   30
CONECT   28   29
CONECT   29   60   61   62
CONECT   30   31
CONECT   31   32   33   33
CONECT   32   63
CONECT   33   34   40
CONECT   34   35   35   36
CONECT   36   37   37   64
CONECT   37   38   39
CONECT   38   65   66   67
CONECT   39   40
CONECT   41   42   42
CONECT   42   68
END

HMDB0033496
     RDKit          3D
Nigerone
 68 73  0  0  0  0  0  0  0  0999 V2000
    2.4279   -3.1459    4.1774 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6249   -2.3335    3.3760 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0760   -1.6641    2.2517 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3883   -1.7650    1.8457 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8412   -1.1010    0.7281 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1591   -1.2476    0.3838 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0921   -2.0198    1.0748 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9548   -0.3293    0.0184 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3602    0.3519   -1.1034 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6217    0.3197   -1.5843 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4321    1.1311   -1.8062 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8539    1.8110   -2.9331 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0385    1.7324   -3.3171 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9192    2.5688   -3.6033 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6026    2.6228   -3.1298 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3557    3.4455   -3.8809 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2577    1.9536   -2.0500 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1302    1.2154   -1.3813 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6919    0.5450   -0.2609 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6954    0.6575    0.1601 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6439   -0.2377   -0.3161 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2106   -1.2152   -1.1884 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0952   -2.1440   -1.7064 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6394   -3.1226   -2.5849 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5301   -4.0803   -3.1240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4109   -2.0616   -1.3262 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9002   -1.0883   -0.4438 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2399   -1.0610   -0.1011 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0928   -2.0347   -0.6621 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9806   -0.1883    0.0432 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3696    0.8034    0.9160 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6422    0.9794    1.3595 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4094    1.7207    1.4069 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8338    2.7059    2.2831 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0372    2.8072    2.6513 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8813    3.5882    2.7483 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5756    3.4717    2.3437 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4563    4.4222    2.8435 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2199    2.5234    1.5130 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1053    1.6474    1.0366 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6229   -0.2145    0.4133 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1947   -0.8868    1.5320 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5925   -4.1524    3.7530 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8881   -3.3112    5.1475 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4025   -2.7078    4.4383 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1056   -2.3791    2.4055 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0708   -1.8715    2.1655 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0062   -3.1172    0.8622 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1087   -1.7056    0.7129 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4577   -0.0750   -1.3808 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2114    3.1046   -4.4744 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0573    3.9388   -3.1692 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8888    2.8617   -4.6544 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1794    4.2683   -4.4064 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1696   -1.2650   -1.4771 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1330   -3.5806   -3.9041 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2199   -4.4773   -2.3221 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9915   -4.9757   -3.4994 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1274   -2.7595   -1.7030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7977   -3.0501   -0.3202 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1453   -1.8994   -0.3197 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0377   -2.0475   -1.7732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4817    0.5454    1.2196 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1470    4.3671    3.4243 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2573    3.8688    3.3738 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0224    5.1812    3.4989 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8760    4.9500    1.9576 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1406   -0.7940    1.8417 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  5  8  2  0
  8  9  1  0
  9 10  1  0
  9 11  2  0
 11 12  1  0
 12 13  2  0
 12 14  1  0
 14 15  2  0
 15 16  1  0
 15 17  1  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 23 26  2  0
 26 27  1  0
 27 28  1  0
 28 29  1  0
 27 30  2  0
 30 31  1  0
 31 32  1  0
 31 33  2  0
 33 34  1  0
 34 35  2  0
 34 36  1  0
 36 37  2  0
 37 38  1  0
 37 39  1  0
 39 40  1  0
 19 41  1  0
 41 42  2  0
 42  3  1  0
 41  8  1  0
 18 11  1  0
 40 20  2  0
 30 21  1  0
 40 33  1  0
  1 43  1  0
  1 44  1  0
  1 45  1  0
  4 46  1  0
  7 47  1  0
  7 48  1  0
  7 49  1  0
 10 50  1  0
 14 51  1  0
 16 52  1  0
 16 53  1  0
 16 54  1  0
 22 55  1  0
 25 56  1  0
 25 57  1  0
 25 58  1  0
 26 59  1  0
 29 60  1  0
 29 61  1  0
 29 62  1  0
 32 63  1  0
 36 64  1  0
 38 65  1  0
 38 66  1  0
 38 67  1  0
 42 68  1  0
M  END

Synonyms

Value	Source
5,5'-Dihydroxy-6,6',8,8'-tetramethoxy-2,2'-dimethyl[10,10'-bi-4H-naphtho[2,3-b]pyran]-4,4'-dione, 9ci	HMDB
Nigerone	MeSH

Molecular Formula

C₃₂H₂₆O₁₀

Average Mass

570.5428

Monoisotopic Mass

570.152597052

IUPAC Name

5-hydroxy-10-{5-hydroxy-6,8-dimethoxy-2-methyl-4-oxo-4H-benzo[g]chromen-10-yl}-6,8-dimethoxy-2-methyl-4H-benzo[g]chromen-4-one

Traditional Name

5-hydroxy-10-{5-hydroxy-6,8-dimethoxy-2-methyl-4-oxobenzo[g]chromen-10-yl}-6,8-dimethoxy-2-methylbenzo[g]chromen-4-one

CAS Registry Number

Not Available

SMILES

COC1=CC2=C(C(O)=C3C(=O)C=C(C)OC3=C2C2=C3OC(C)=CC(=O)C3=C(O)C3=C2C=C(OC)C=C3OC)C(OC)=C1

InChI Identifier

InChI=1S/C32H26O10/c1-13-7-19(33)27-29(35)23-17(9-15(37-3)11-21(23)39-5)25(31(27)41-13)26-18-10-16(38-4)12-22(40-6)24(18)30(36)28-20(34)8-14(2)42-32(26)28/h7-12,35-36H,1-6H3

InChI Key

MBDIPBHBEVOYQB-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as naphthopyranones. Naphthopyranones are compounds containing a naphthopyran skeleton where a ring carbon bears a carboxylic acid group. Naphthtopyran is made up of the pyran ring fused to a naphthalene ring system.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Naphthopyrans

Sub Class

Naphthopyranones

Direct Parent

Naphthopyranones

Alternative Parents

Substituents

Naphthopyranone
Biphenol
Chromone
1-naphthol
Benzopyran
Naphthalene
1-benzopyran
Anisole
Alkyl aryl ether
Pyranone
Benzenoid
Pyran
Heteroaromatic compound
Vinylogous acid
Ether
Oxacycle
Organic oxygen compound
Hydrocarbon derivative
Organic oxide
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.0044 g/L	ALOGPS
logP	4.24	ALOGPS
logP	5.46	ChemAxon
logS	-5.1	ALOGPS
pKa (Strongest Acidic)	7.65	ChemAxon
pKa (Strongest Basic)	-4.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	129.98 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	156.01 m³·mol⁻¹	ChemAxon
Polarizability	58.43 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	2	Human feces	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

HMDB0033496

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB011548

KNApSAcK ID

C00057541

Chemspider ID

131805

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

149547

PDB ID

Not Available

ChEBI ID

145950

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]
Yannai, Shmuel (2004). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. Boca Raton: Chapman & Hall/CRC..

Showing metabocard for Nigerone (MMDBc0003715)

MOL for #<Metabolite:0x00007f91e79f7678>

3D MOL for #<Metabolite:0x00007f91e79f7678>

3D SDF for #<Metabolite:0x00007f91e79f7678>

3D-SDF for #<Metabolite:0x00007f91e79f7678>

PDB for #<Metabolite:0x00007f91e79f7678>

3D PDB for #<Metabolite:0x00007f91e79f7678>

SMILES for #<Metabolite:0x00007f91e79f7678>

INCHI for #<Metabolite:0x00007f91e79f7678>

Structure for #<Metabolite:0x00007f91e79f7678>

3D Structure for #<Metabolite:0x00007f91e79f7678>