MiMeDB: Showing metabocard for Agrocybenine (MMDBc0005806)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-05-14 23:16:08 UTC

Update Date

2025-01-16 08:11:05 UTC

Metabolite ID

MMDBc0005806

Metabolite Identification

Common Name

Agrocybenine

Description

Agrocybenine is found in mushrooms. Agrocybenine is an alkaloid from the edible Korean mushroom yangimatusutake (Agrocybe cylindracea).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0041445
     RDKit          3D
Agrocybenine
 33 34  0  0  0  0  0  0  0  0999 V2000
    0.4772    2.6251   -1.2646 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7442    1.3021   -0.6416 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2293    0.4210   -0.3841 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6110    0.6316   -0.6663 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3576   -0.4115    0.0405 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9007    0.2399    1.2893 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4691   -0.8537   -0.8923 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3743   -1.5003    0.3113 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0118   -0.8768    0.2212 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1541   -1.2591    0.5501 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.3108   -0.4479    0.3487 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2783   -1.2465   -0.5327 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9789   -0.3130    1.7185 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0778    0.8656   -0.2657 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0408    1.6403   -0.4775 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5050    2.5827   -1.7953 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2356    2.8777   -2.0471 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4032    3.4303   -0.5034 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0522    1.3509   -1.2409 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4680    1.1483    0.9637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0287    0.5889    1.8762 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5309   -0.4452    1.8879 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4156   -1.9452   -1.0805 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4136   -0.3593   -1.8833 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4386   -0.5770   -0.4454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4220   -2.3452   -0.4061 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4958   -1.8465    1.3738 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0444   -1.1116   -1.6016 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2980   -0.8283   -0.3564 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2979   -2.2982   -0.2031 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3011   -1.3451    1.9887 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8667    0.3163    1.6817 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2151   -0.0102    2.4363 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  5  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 11 13  1  0
 11 14  1  0
 14 15  2  0
 14  2  1  0
  9  3  1  0
  1 16  1  0
  1 17  1  0
  1 18  1  0
  4 19  1  0
  6 20  1  0
  6 21  1  0
  6 22  1  0
  7 23  1  0
  7 24  1  0
  7 25  1  0
  8 26  1  0
  8 27  1  0
 12 28  1  0
 12 29  1  0
 12 30  1  0
 13 31  1  0
 13 32  1  0
 13 33  1  0
M  END


  Mrv0541 05061312402D          

 15 16  0  0  0  0            999 V2000
    2.6378    0.9521    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0407   -1.2500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0407   -0.1459    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1648   -0.9672    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6345   -1.8857    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -1.3654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538   -0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -1.5229    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -0.0305    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    0.1271    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  7  1  1  0  0  0  0
  8  6  1  0  0  0  0
  9  7  2  0  0  0  0
  9  8  1  0  0  0  0
 10  7  1  0  0  0  0
 11  2  1  0  0  0  0
 11  3  1  0  0  0  0
 11  6  1  0  0  0  0
 12  4  1  0  0  0  0
 12  5  1  0  0  0  0
 12 10  1  0  0  0  0
 13  8  2  0  0  0  0
 13 12  1  0  0  0  0
 14  9  1  0  0  0  0
 14 11  1  0  0  0  0
 15 10  2  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0005806

> <DATABASE_NAME>
MIME

> <SMILES>
CC1=C2NC(C)(C)CC2=NC(C)(C)C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C12H18N2O/c1-7-9-8(6-11(2,3)14-9)13-12(4,5)10(7)15/h14H,6H2,1-5H3

> <INCHI_KEY>
OTBGQBSPIWKINO-UHFFFAOYSA-N

> <FORMULA>
C12H18N2O

> <MOLECULAR_WEIGHT>
206.2841

> <EXACT_MASS>
206.141913208

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_AVERAGE_POLARIZABILITY>
23.569561691677308

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2,2,5,5,7-pentamethyl-1H,2H,3H,5H,6H-pyrrolo[3,2-b]pyridin-6-one

> <ALOGPS_LOGP>
1.86

> <JCHEM_LOGP>
1.8653191866666665

> <ALOGPS_LOGS>
-2.57

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
6.775108234250574

> <JCHEM_POLAR_SURFACE_AREA>
41.46

> <JCHEM_REFRACTIVITY>
61.265

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.54e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2,2,5,5,7-pentamethyl-1H,3H-pyrrolo[3,2-b]pyridin-6-one

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0041445
     RDKit          3D
Agrocybenine
 33 34  0  0  0  0  0  0  0  0999 V2000
    0.4772    2.6251   -1.2646 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7442    1.3021   -0.6416 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2293    0.4210   -0.3841 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6110    0.6316   -0.6663 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3576   -0.4115    0.0405 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9007    0.2399    1.2893 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4691   -0.8537   -0.8923 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3743   -1.5003    0.3113 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0118   -0.8768    0.2212 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1541   -1.2591    0.5501 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.3108   -0.4479    0.3487 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2783   -1.2465   -0.5327 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9789   -0.3130    1.7185 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0778    0.8656   -0.2657 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0408    1.6403   -0.4775 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5050    2.5827   -1.7953 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2356    2.8777   -2.0471 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4032    3.4303   -0.5034 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0522    1.3509   -1.2409 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4680    1.1483    0.9637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0287    0.5889    1.8762 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5309   -0.4452    1.8879 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4156   -1.9452   -1.0805 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4136   -0.3593   -1.8833 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4386   -0.5770   -0.4454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4220   -2.3452   -0.4061 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4958   -1.8465    1.3738 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0444   -1.1116   -1.6016 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2980   -0.8283   -0.3564 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2979   -2.2982   -0.2031 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3011   -1.3451    1.9887 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8667    0.3163    1.6817 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2151   -0.0102    2.4363 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  5  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 11 13  1  0
 11 14  1  0
 14 15  2  0
 14  2  1  0
  9  3  1  0
  1 16  1  0
  1 17  1  0
  1 18  1  0
  4 19  1  0
  6 20  1  0
  6 21  1  0
  6 22  1  0
  7 23  1  0
  7 24  1  0
  7 25  1  0
  8 26  1  0
  8 27  1  0
 12 28  1  0
 12 29  1  0
 12 30  1  0
 13 31  1  0
 13 32  1  0
 13 33  1  0
M  END

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0       4.924   1.777   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.076  -2.333   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.076  -0.272   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.774  -1.805   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.784  -3.520   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.126  -2.549   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.924   0.237   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.590  -2.073   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.590  -0.533   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.258  -0.533   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.220  -1.303   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.258  -2.073   0.000  0.00  0.00           C+0
HETATM   13  N   UNK     0       4.924  -2.843   0.000  0.00  0.00           N+0
HETATM   14  N   UNK     0       2.126  -0.057   0.000  0.00  0.00           N+0
HETATM   15  O   UNK     0       7.591   0.237   0.000  0.00  0.00           O+0
CONECT    1    7                                                            
CONECT    2   11                                                            
CONECT    3   11                                                            
CONECT    4   12                                                            
CONECT    5   12                                                            
CONECT    6    8   11                                                       
CONECT    7    1    9   10                                                  
CONECT    8    6    9   13                                                  
CONECT    9    7    8   14                                                  
CONECT   10    7   12   15                                                  
CONECT   11    2    3    6   14                                             
CONECT   12    4    5   10   13                                             
CONECT   13    8   12                                                       
CONECT   14    9   11                                                       
CONECT   15   10                                                            
MASTER        0    0    0    0    0    0    0    0   15    0   32    0
END

COMPND    HMDB0041445
HETATM    1  C1  UNL     1       0.477   2.625  -1.265  1.00  0.00           C  
HETATM    2  C2  UNL     1       0.744   1.302  -0.642  1.00  0.00           C  
HETATM    3  C3  UNL     1      -0.229   0.421  -0.384  1.00  0.00           C  
HETATM    4  N1  UNL     1      -1.611   0.632  -0.666  1.00  0.00           N  
HETATM    5  C4  UNL     1      -2.358  -0.411   0.041  1.00  0.00           C  
HETATM    6  C5  UNL     1      -2.901   0.240   1.289  1.00  0.00           C  
HETATM    7  C6  UNL     1      -3.469  -0.854  -0.892  1.00  0.00           C  
HETATM    8  C7  UNL     1      -1.374  -1.500   0.311  1.00  0.00           C  
HETATM    9  C8  UNL     1      -0.012  -0.877   0.221  1.00  0.00           C  
HETATM   10  N2  UNL     1       1.154  -1.259   0.550  1.00  0.00           N  
HETATM   11  C9  UNL     1       2.311  -0.448   0.349  1.00  0.00           C  
HETATM   12  C10 UNL     1       3.278  -1.246  -0.533  1.00  0.00           C  
HETATM   13  C11 UNL     1       2.979  -0.313   1.719  1.00  0.00           C  
HETATM   14  C12 UNL     1       2.078   0.866  -0.266  1.00  0.00           C  
HETATM   15  O1  UNL     1       3.041   1.640  -0.477  1.00  0.00           O  
HETATM   16  H1  UNL     1      -0.505   2.583  -1.795  1.00  0.00           H  
HETATM   17  H2  UNL     1       1.236   2.878  -2.047  1.00  0.00           H  
HETATM   18  H3  UNL     1       0.403   3.430  -0.503  1.00  0.00           H  
HETATM   19  H4  UNL     1      -2.052   1.351  -1.241  1.00  0.00           H  
HETATM   20  H5  UNL     1      -3.468   1.148   0.964  1.00  0.00           H  
HETATM   21  H6  UNL     1      -2.029   0.589   1.876  1.00  0.00           H  
HETATM   22  H7  UNL     1      -3.531  -0.445   1.888  1.00  0.00           H  
HETATM   23  H8  UNL     1      -3.416  -1.945  -1.080  1.00  0.00           H  
HETATM   24  H9  UNL     1      -3.414  -0.359  -1.883  1.00  0.00           H  
HETATM   25  H10 UNL     1      -4.439  -0.577  -0.445  1.00  0.00           H  
HETATM   26  H11 UNL     1      -1.422  -2.345  -0.406  1.00  0.00           H  
HETATM   27  H12 UNL     1      -1.496  -1.846   1.374  1.00  0.00           H  
HETATM   28  H13 UNL     1       3.044  -1.112  -1.602  1.00  0.00           H  
HETATM   29  H14 UNL     1       4.298  -0.828  -0.356  1.00  0.00           H  
HETATM   30  H15 UNL     1       3.298  -2.298  -0.203  1.00  0.00           H  
HETATM   31  H16 UNL     1       3.301  -1.345   1.989  1.00  0.00           H  
HETATM   32  H17 UNL     1       3.867   0.316   1.682  1.00  0.00           H  
HETATM   33  H18 UNL     1       2.215  -0.010   2.436  1.00  0.00           H  
CONECT    1    2   16   17   18
CONECT    2    3    3   14
CONECT    3    4    9
CONECT    4    5   19
CONECT    5    6    7    8
CONECT    6   20   21   22
CONECT    7   23   24   25
CONECT    8    9   26   27
CONECT    9   10   10
CONECT   10   11
CONECT   11   12   13   14
CONECT   12   28   29   30
CONECT   13   31   32   33
CONECT   14   15   15
END

HMDB0041445
     RDKit          3D
Agrocybenine
 33 34  0  0  0  0  0  0  0  0999 V2000
    0.4772    2.6251   -1.2646 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7442    1.3021   -0.6416 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2293    0.4210   -0.3841 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6110    0.6316   -0.6663 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3576   -0.4115    0.0405 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9007    0.2399    1.2893 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4691   -0.8537   -0.8923 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3743   -1.5003    0.3113 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0118   -0.8768    0.2212 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1541   -1.2591    0.5501 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.3108   -0.4479    0.3487 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2783   -1.2465   -0.5327 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9789   -0.3130    1.7185 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0778    0.8656   -0.2657 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0408    1.6403   -0.4775 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5050    2.5827   -1.7953 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2356    2.8777   -2.0471 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4032    3.4303   -0.5034 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0522    1.3509   -1.2409 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4680    1.1483    0.9637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0287    0.5889    1.8762 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5309   -0.4452    1.8879 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4156   -1.9452   -1.0805 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4136   -0.3593   -1.8833 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4386   -0.5770   -0.4454 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4220   -2.3452   -0.4061 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4958   -1.8465    1.3738 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0444   -1.1116   -1.6016 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2980   -0.8283   -0.3564 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2979   -2.2982   -0.2031 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3011   -1.3451    1.9887 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8667    0.3163    1.6817 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2151   -0.0102    2.4363 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  5  7  1  0
  5  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 11 13  1  0
 11 14  1  0
 14 15  2  0
 14  2  1  0
  9  3  1  0
  1 16  1  0
  1 17  1  0
  1 18  1  0
  4 19  1  0
  6 20  1  0
  6 21  1  0
  6 22  1  0
  7 23  1  0
  7 24  1  0
  7 25  1  0
  8 26  1  0
  8 27  1  0
 12 28  1  0
 12 29  1  0
 12 30  1  0
 13 31  1  0
 13 32  1  0
 13 33  1  0
M  END

Synonyms

Value	Source
1,2,3,5-tetrahydro-2,2,5,5,7-Pentamethyl-6H-pyrrolo[2,3-b]pyridin-6-one, 9ci	HMDB

Molecular Formula

C₁₂H₁₈N₂O

Average Mass

206.2841

Monoisotopic Mass

206.141913208

IUPAC Name

2,2,5,5,7-pentamethyl-1H,2H,3H,5H,6H-pyrrolo[3,2-b]pyridin-6-one

Traditional Name

2,2,5,5,7-pentamethyl-1H,3H-pyrrolo[3,2-b]pyridin-6-one

CAS Registry Number

Not Available

SMILES

CC1=C2NC(C)(C)CC2=NC(C)(C)C1=O

InChI Identifier

InChI=1S/C12H18N2O/c1-7-9-8(6-11(2,3)14-9)13-12(4,5)10(7)15/h14H,6H2,1-5H3

InChI Key

OTBGQBSPIWKINO-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyrrolopyridines. Pyrrolopyridines are compounds containing a pyrrolopyridine moiety, which consists of a pyrrole ring fused to a pyridine. Pyrrole is 5-membered ring consisting of four carbon atoms and one nitrogen atom. Pyridine is a 6-membered ring consisting of five carbon atoms and one nitrogen center.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Pyrrolopyridines

Sub Class

Not Available

Direct Parent

Pyrrolopyridines

Alternative Parents

Substituents

Pyrrolopyridine
Pyridine
Pyrrolidine
Vinylogous amide
Ketimine
Ketone
Cyclic ketone
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Azacycle
Secondary amine
Secondary aliphatic amine
Enamine
Hydrocarbon derivative
Organic nitrogen compound
Organooxygen compound
Organonitrogen compound
Amine
Imine
Organic oxygen compound
Organopnictogen compound
Organic oxide
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Not Available

Predicted Properties

Property	Value	Source
Water Solubility	0.55 g/L	ALOGPS
logP	1.86	ALOGPS
logP	1.87	ChemAxon
logS	-2.6	ALOGPS
pKa (Strongest Basic)	6.78	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	41.46 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	61.26 m³·mol⁻¹	ChemAxon
Polarizability	23.57 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	splash10-0udl-3900000000-004e49894baea0339d29	2017-09-01	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-0a4i-0190000000-f3fe2bf3a97beeacc5dd	2017-09-01	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-0a4i-1960000000-3e3b9550493822128da3	2017-09-01	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-014i-9000000000-596872f3a3aa3a8fffe7	2017-09-01	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-0a4i-0090000000-b901ce8e24e79a027638	2017-09-01	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-052b-9040000000-a5f283dd20be5a0335e5	2017-09-01	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-03ki-2900000000-2dbc0df0e5f2d4fe189e	2017-09-01	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-0a4i-0090000000-f986a2b5346dd94f331a	2021-09-21	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-0a4i-0090000000-d01987e2e2a1ffcb3f4e	2021-09-21	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-0fdp-5920000000-8f98f4b4afa2fc8fb5a8	2021-09-21	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-0a4i-0090000000-3e5ae49add9b8a734651	2021-09-25	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-0a4i-1970000000-daf84e5cdc2ad39ca18f	2021-09-25	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-0006-9500000000-e9bdb2b5e5d5db8fcd82	2021-09-25	View Spectrum

Biological Properties

Cellular Locations

Cytoplasm
Extracellular

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Basidiomycota	3	Human feces	Metabolic reconstruction

Exposure Sources

Source Type	Activity	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

HMDB0041445

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB021396

KNApSAcK ID

C00027822

Chemspider ID

10446240

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

23278458

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]
Yannai, Shmuel (2004). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. Boca Raton: Chapman & Hall/CRC..

Showing metabocard for Agrocybenine (MMDBc0005806)

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