MiMeDB: Showing metabocard for Cephalimysin A (MMDBc0006816)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-05-15 00:12:44 UTC

Update Date

2022-08-31 06:26:11 UTC

Metabolite ID

MMDBc0006816

Metabolite Identification

Common Name

Cephalimysin A

Description

Cephalimysin A belongs to the class of organic compounds known as alkyl-phenylketones. These are aromatic compounds containing a ketone substituted by one alkyl group, and a phenyl group. Based on a literature review very few articles have been published on Cephalimysin A.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152102122D          

 32 34  0  0  1  0            999 V2000
   -4.2633   -0.4481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6674    1.3099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0975    2.1840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5097   -0.7837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8422   -0.2987    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0886   -0.6343    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3662   -1.5223    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8512   -0.8548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5458   -1.4360    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4211   -0.1494    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5156   -0.1011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2102   -0.6824    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6674   -0.4849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6951   -0.0149    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7846    1.0799    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3596    0.7388    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7545    1.0799    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7545   -0.2549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2695    0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5391    0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5391   -0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.0396    1.8646    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8445    1.4062    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4995    1.8646    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4995   -1.0396    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7106    1.6320    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7846   -0.2549    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9285    0.5218    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0023   -1.4548    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3378    1.6633    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  4  1  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  2  0  0  0  0
  8  7  2  0  0  0  0
  9  7  1  0  0  0  0
 10  6  1  0  0  0  0
 11  8  1  0  0  0  0
 12  9  2  0  0  0  0
 13 10  1  0  0  0  0
 14  2  1  0  0  0  0
 15 11  2  0  0  0  0
 15 12  1  0  0  0  0
 16 13  1  0  0  0  0
 16 14  2  0  0  0  0
 17 14  1  0  0  0  0
 18 15  1  0  0  0  0
 21 17  1  0  0  0  0
 21 19  1  0  0  0  0
 21 20  1  0  0  0  0
 22 18  1  1  0  0  0
 22 19  1  0  0  0  0
 23 20  2  0  0  0  0
 23 22  1  0  0  0  0
 24 17  2  0  0  0  0
 25 18  2  0  0  0  0
 19 26  1  1  0  0  0
 27 20  1  0  0  0  0
 28  3  1  0  0  0  0
 22 28  1  6  0  0  0
 29 16  1  0  0  0  0
 21 29  1  6  0  0  0
 30  5  1  0  0  0  0
 31  6  1  0  0  0  0
 19 32  1  6  0  0  0
M  END


  Mrv1652305152102122D          

 32 34  0  0  1  0            999 V2000
   -4.2633   -0.4481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6674    1.3099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0975    2.1840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5097   -0.7837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8422   -0.2987    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0886   -0.6343    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3662   -1.5223    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8512   -0.8548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5458   -1.4360    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4211   -0.1494    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5156   -0.1011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2102   -0.6824    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6674   -0.4849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6951   -0.0149    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7846    1.0799    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3596    0.7388    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7545    1.0799    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7545   -0.2549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2695    0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5391    0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5391   -0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.0396    1.8646    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8445    1.4062    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4995    1.8646    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4995   -1.0396    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7106    1.6320    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7846   -0.2549    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9285    0.5218    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0023   -1.4548    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3378    1.6633    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  4  1  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  2  0  0  0  0
  8  7  2  0  0  0  0
  9  7  1  0  0  0  0
 10  6  1  0  0  0  0
 11  8  1  0  0  0  0
 12  9  2  0  0  0  0
 13 10  1  0  0  0  0
 14  2  1  0  0  0  0
 15 11  2  0  0  0  0
 15 12  1  0  0  0  0
 16 13  1  0  0  0  0
 16 14  2  0  0  0  0
 17 14  1  0  0  0  0
 18 15  1  0  0  0  0
 21 17  1  0  0  0  0
 21 19  1  0  0  0  0
 21 20  1  0  0  0  0
 22 18  1  1  0  0  0
 22 19  1  0  0  0  0
 23 20  2  0  0  0  0
 23 22  1  0  0  0  0
 24 17  2  0  0  0  0
 25 18  2  0  0  0  0
 19 26  1  1  0  0  0
 27 20  1  0  0  0  0
 28  3  1  0  0  0  0
 22 28  1  6  0  0  0
 29 16  1  0  0  0  0
 21 29  1  6  0  0  0
 30  5  1  0  0  0  0
 31  6  1  0  0  0  0
 19 32  1  6  0  0  0
M  END
> <DATABASE_ID>
MMDBc0006816

> <DATABASE_NAME>
MIME

> <SMILES>
[H]\C(CC)=C(\[H])CCC1=C(C)C(=O)[C@]2(O1)C(O)=N[C@](OC)(C(=O)C1=CC=CC=C1)[C@]2([H])O

> <INCHI_IDENTIFIER>
InChI=1S/C22H25NO6/c1-4-5-6-10-13-16-14(2)17(24)21(29-16)19(26)22(28-3,23-20(21)27)18(25)15-11-8-7-9-12-15/h5-9,11-12,19,26H,4,10,13H2,1-3H3,(H,23,27)/b6-5+/t19-,21-,22+/m1/s1

> <INCHI_KEY>
DOQXBDAURVMBOF-QMOITNCKSA-N

> <FORMULA>
C22H25NO6

> <MOLECULAR_WEIGHT>
399.443

> <EXACT_MASS>
399.168187529

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
54

> <JCHEM_AVERAGE_POLARIZABILITY>
42.61781085408656

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(5R,8R,9R)-8-benzoyl-2-[(3E)-hex-3-en-1-yl]-6,9-dihydroxy-8-methoxy-3-methyl-1-oxa-7-azaspiro[4.4]nona-2,6-dien-4-one

> <ALOGPS_LOGP>
2.98

> <JCHEM_LOGP>
4.047646001666665

> <ALOGPS_LOGS>
-4.38

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.200386395383962

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.5735629794763675

> <JCHEM_PKA_STRONGEST_BASIC>
-4.13907959843442

> <JCHEM_POLAR_SURFACE_AREA>
105.42000000000002

> <JCHEM_REFRACTIVITY>
108.3526

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.67e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(5R,8R,9R)-8-benzoyl-2-[(3E)-hex-3-en-1-yl]-6,9-dihydroxy-8-methoxy-3-methyl-1-oxa-7-azaspiro[4.4]nona-2,6-dien-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0      -7.958  -0.836   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.246   2.445   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.915   4.077   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -6.551  -1.463   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -5.305  -0.558   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -3.899  -1.184   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.150  -2.842   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.056  -1.596   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.619  -2.681   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.653  -0.279   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.429  -0.189   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.992  -1.274   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.246  -0.905   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.000   1.540   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.898  -0.028   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.000   0.000   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.465   2.016   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.271   1.379   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.275   2.016   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.275  -0.476   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.370   0.770   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.740   1.540   0.000  0.00  0.00           C+0
HETATM   23  N   UNK     0       4.740  -0.000   0.000  0.00  0.00           N+0
HETATM   24  O   UNK     0       1.941   3.481   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0       7.176   2.625   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0       2.799   3.481   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       2.799  -1.941   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0       5.060   3.046   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0       1.465  -0.476   0.000  0.00  0.00           O+0
HETATM   30  H   UNK     0      -5.466   0.974   0.000  0.00  0.00           H+0
HETATM   31  H   UNK     0      -3.738  -2.716   0.000  0.00  0.00           H+0
HETATM   32  H   UNK     0       4.364   3.105   0.000  0.00  0.00           H+0
CONECT    1    4                                                            
CONECT    2   14                                                            
CONECT    3   28                                                            
CONECT    4    1    5                                                       
CONECT    5    4    6   30                                                  
CONECT    6    5   10   31                                                  
CONECT    7    8    9                                                       
CONECT    8    7   11                                                       
CONECT    9    7   12                                                       
CONECT   10    6   13                                                       
CONECT   11    8   15                                                       
CONECT   12    9   15                                                       
CONECT   13   10   16                                                       
CONECT   14    2   16   17                                                  
CONECT   15   11   12   18                                                  
CONECT   16   13   14   29                                                  
CONECT   17   14   21   24                                                  
CONECT   18   15   22   25                                                  
CONECT   19   21   22   26   32                                             
CONECT   20   21   23   27                                                  
CONECT   21   17   19   20   29                                             
CONECT   22   18   19   23   28                                             
CONECT   23   20   22                                                       
CONECT   24   17                                                            
CONECT   25   18                                                            
CONECT   26   19                                                            
CONECT   27   20                                                            
CONECT   28    3   22                                                       
CONECT   29   16   21                                                       
CONECT   30    5                                                            
CONECT   31    6                                                            
CONECT   32   19                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   68    0
END

Synonyms

Not Available

Molecular Formula

C₂₂H₂₅NO₆

Average Mass

399.443

Monoisotopic Mass

399.168187529

IUPAC Name

(5R,8R,9R)-8-benzoyl-2-[(3E)-hex-3-en-1-yl]-6,9-dihydroxy-8-methoxy-3-methyl-1-oxa-7-azaspiro[4.4]nona-2,6-dien-4-one

Traditional Name

(5R,8R,9R)-8-benzoyl-2-[(3E)-hex-3-en-1-yl]-6,9-dihydroxy-8-methoxy-3-methyl-1-oxa-7-azaspiro[4.4]nona-2,6-dien-4-one

CAS Registry Number

Not Available

SMILES

[H]\C(CC)=C(\[H])CCC1=C(C)C(=O)[C@]2(O1)C(O)=N[C@](OC)(C(=O)C1=CC=CC=C1)[C@]2([H])O

InChI Identifier

InChI=1S/C22H25NO6/c1-4-5-6-10-13-16-14(2)17(24)21(29-16)19(26)22(28-3,23-20(21)27)18(25)15-11-8-7-9-12-15/h5-9,11-12,19,26H,4,10,13H2,1-3H3,(H,23,27)/b6-5+/t19-,21-,22+/m1/s1

InChI Key

DOQXBDAURVMBOF-QMOITNCKSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as alkyl-phenylketones. These are aromatic compounds containing a ketone substituted by one alkyl group, and a phenyl group.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbonyl compounds

Direct Parent

Alkyl-phenylketones

Alternative Parents

Substituents

Alkyl-phenylketone
Benzoyl
Aryl alkyl ketone
Monocyclic benzene moiety
3-furanone
Pyrrolidone
2-pyrrolidone
Benzenoid
Dihydrofuran
Pyrrolidine
Vinylogous ester
Secondary alcohol
Lactam
Carboxamide group
Secondary carboxylic acid amide
Azacycle
Oxacycle
Carboxylic acid derivative
Organoheterocyclic compound
Organonitrogen compound
Hydrocarbon derivative
Alcohol
Organic oxide
Organic nitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.017 g/L	ALOGPS
logP	2.98	ALOGPS
logP	4.05	ChemAxon
logS	-4.4	ALOGPS
pKa (Strongest Acidic)	1.57	ChemAxon
pKa (Strongest Basic)	-4.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	105.42 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	108.35 m³·mol⁻¹	ChemAxon
Polarizability	42.62 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	2	Human feces	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

27023100

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

23624816

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for Cephalimysin A (MMDBc0006816)

MOL for #<Metabolite:0x00005645c9ed02c8>

3D MOL for #<Metabolite:0x00005645c9ed02c8>

3D SDF for #<Metabolite:0x00005645c9ed02c8>

3D-SDF for #<Metabolite:0x00005645c9ed02c8>

PDB for #<Metabolite:0x00005645c9ed02c8>

3D PDB for #<Metabolite:0x00005645c9ed02c8>

SMILES for #<Metabolite:0x00005645c9ed02c8>

INCHI for #<Metabolite:0x00005645c9ed02c8>

Structure for #<Metabolite:0x00005645c9ed02c8>

3D Structure for #<Metabolite:0x00005645c9ed02c8>