MiMeDB: Showing metabocard for Yaminterritrem A (MMDBc0009077)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-05-15 01:43:02 UTC

Update Date

2022-08-31 06:29:32 UTC

Metabolite ID

MMDBc0009077

Metabolite Identification

Common Name

Yaminterritrem A

Description

9-[4-hydroxy-6-(4-methoxyphenyl)-2-oxo-2H-pyran-3-yl]-5-methyl-1-(4-methyl-3-oxopentyl)-6-oxabicyclo[3.2.2]nonan-2-one belongs to the class of organic compounds known as anisoles. These are organic compounds containing a methoxybenzene or a derivative thereof. Based on a literature review very few articles have been published on 9-[4-hydroxy-6-(4-methoxyphenyl)-2-oxo-2H-pyran-3-yl]-5-methyl-1-(4-methyl-3-oxopentyl)-6-oxabicyclo[3.2.2]nonan-2-one.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152103432D          

 34 37  0  0  0  0            999 V2000
   -1.4824    4.2387    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9036    2.8732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4614   -1.3187    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2647   -3.3284    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6548   -0.9671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0348   -2.2545    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3981   -1.3250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7781   -2.6125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3269    2.3869    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8073    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4493   -0.3308    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4614    2.1437    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1682   -0.2512    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7995    0.7215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2988    3.4344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9732   -1.4318    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4598   -2.1477    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5105    3.1912    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4249    0.1068    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2299   -1.0739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4493    1.1558    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7433   -0.3580    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8050   -1.1806    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6450   -0.5144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6450    1.3394    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0943    3.7523    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3633    0.9295    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9637    1.8008    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1233   -1.6454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2031   -2.5057    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7995    0.1035    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5483   -1.5386    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  7  5  1  0  0  0  0
  8  6  2  0  0  0  0
 11 10  1  0  0  0  0
 12  9  1  0  0  0  0
 16  1  1  0  0  0  0
 16  2  1  0  0  0  0
 17  5  2  0  0  0  0
 17  6  1  0  0  0  0
 18  7  2  0  0  0  0
 18  8  1  0  0  0  0
 19 14  1  0  0  0  0
 20  9  1  0  0  0  0
 20 16  1  0  0  0  0
 21 13  1  0  0  0  0
 22 13  2  0  0  0  0
 22 17  1  0  0  0  0
 23 10  1  0  0  0  0
 24 19  1  0  0  0  0
 24 21  2  0  0  0  0
 25 24  1  0  0  0  0
 26  3  1  0  0  0  0
 26 11  1  0  0  0  0
 26 19  1  0  0  0  0
 27 12  1  0  0  0  0
 27 14  1  0  0  0  0
 27 15  1  0  0  0  0
 27 23  1  0  0  0  0
 28 20  2  0  0  0  0
 29 21  1  0  0  0  0
 30 23  2  0  0  0  0
 31 25  2  0  0  0  0
 32  4  1  0  0  0  0
 32 18  1  0  0  0  0
 33 15  1  0  0  0  0
 33 26  1  0  0  0  0
 34 22  1  0  0  0  0
 34 25  1  0  0  0  0
M  END


  Mrv1652305152103432D          

 34 37  0  0  0  0            999 V2000
   -1.4824    4.2387    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9036    2.8732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4614   -1.3187    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2647   -3.3284    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6548   -0.9671    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0348   -2.2545    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3981   -1.3250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7781   -2.6125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3269    2.3869    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8073    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4493   -0.3308    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4614    2.1437    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1682   -0.2512    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7995    0.7215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2988    3.4344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9732   -1.4318    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4598   -2.1477    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5105    3.1912    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4249    0.1068    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2299   -1.0739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4493    1.1558    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7433   -0.3580    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8050   -1.1806    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6450   -0.5144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6450    1.3394    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0943    3.7523    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3633    0.9295    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9637    1.8008    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1233   -1.6454    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2031   -2.5057    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7995    0.1035    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5483   -1.5386    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  7  5  1  0  0  0  0
  8  6  2  0  0  0  0
 11 10  1  0  0  0  0
 12  9  1  0  0  0  0
 16  1  1  0  0  0  0
 16  2  1  0  0  0  0
 17  5  2  0  0  0  0
 17  6  1  0  0  0  0
 18  7  2  0  0  0  0
 18  8  1  0  0  0  0
 19 14  1  0  0  0  0
 20  9  1  0  0  0  0
 20 16  1  0  0  0  0
 21 13  1  0  0  0  0
 22 13  2  0  0  0  0
 22 17  1  0  0  0  0
 23 10  1  0  0  0  0
 24 19  1  0  0  0  0
 24 21  2  0  0  0  0
 25 24  1  0  0  0  0
 26  3  1  0  0  0  0
 26 11  1  0  0  0  0
 26 19  1  0  0  0  0
 27 12  1  0  0  0  0
 27 14  1  0  0  0  0
 27 15  1  0  0  0  0
 27 23  1  0  0  0  0
 28 20  2  0  0  0  0
 29 21  1  0  0  0  0
 30 23  2  0  0  0  0
 31 25  2  0  0  0  0
 32  4  1  0  0  0  0
 32 18  1  0  0  0  0
 33 15  1  0  0  0  0
 33 26  1  0  0  0  0
 34 22  1  0  0  0  0
 34 25  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0009077

> <DATABASE_NAME>
MIME

> <SMILES>
COC1=CC=C(C=C1)C1=CC(O)=C(C2CC3(CCC(=O)C(C)C)COC2(C)CCC3=O)C(=O)O1

> <INCHI_IDENTIFIER>
InChI=1S/C27H32O7/c1-16(2)20(28)9-12-27-14-19(26(3,33-15-27)11-10-23(27)30)24-21(29)13-22(34-25(24)31)17-5-7-18(32-4)8-6-17/h5-8,13,16,19,29H,9-12,14-15H2,1-4H3

> <INCHI_KEY>
KOBHRKRRZILYFW-UHFFFAOYSA-N

> <FORMULA>
C27H32O7

> <MOLECULAR_WEIGHT>
468.546

> <EXACT_MASS>
468.21480337

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
66

> <JCHEM_AVERAGE_POLARIZABILITY>
50.60784809669486

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
9-[4-hydroxy-6-(4-methoxyphenyl)-2-oxo-2H-pyran-3-yl]-5-methyl-1-(4-methyl-3-oxopentyl)-6-oxabicyclo[3.2.2]nonan-2-one

> <ALOGPS_LOGP>
3.32

> <JCHEM_LOGP>
3.8434995763333335

> <ALOGPS_LOGS>
-5.10

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
18.246154794789977

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.095531415313721

> <JCHEM_PKA_STRONGEST_BASIC>
-4.088340881608984

> <JCHEM_POLAR_SURFACE_AREA>
99.13000000000002

> <JCHEM_REFRACTIVITY>
128.0747

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.74e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
9-[4-hydroxy-6-(4-methoxyphenyl)-2-oxopyran-3-yl]-5-methyl-1-(4-methyl-3-oxopentyl)-6-oxabicyclo[3.2.2]nonan-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0      -2.767   7.912   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.553   5.363   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.861  -2.462   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -9.828  -6.213   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -6.822  -1.805   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -5.665  -4.208   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -8.210  -2.473   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -7.053  -4.877   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.610   4.455   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.374   0.770   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.705  -0.617   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.861   4.002   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -4.047  -0.469   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.000   1.540   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.492   1.347   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -2.425   6.411   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -5.550  -2.673   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -8.325  -4.009   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.953   5.957   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -2.660   0.199   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -4.162  -2.005   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.705   2.157   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -1.387  -0.668   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -1.503  -2.204   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       1.204  -0.960   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       1.204   2.500   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       0.176   7.004   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0      -2.545   1.735   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0       3.666   3.362   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0      -0.230  -3.071   0.000  0.00  0.00           O+0
HETATM   32  O   UNK     0      -9.712  -4.677   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0       1.492   0.193   0.000  0.00  0.00           O+0
HETATM   34  O   UNK     0      -2.890  -2.872   0.000  0.00  0.00           O+0
CONECT    1   16                                                            
CONECT    2   16                                                            
CONECT    3   26                                                            
CONECT    4   32                                                            
CONECT    5    7   17                                                       
CONECT    6    8   17                                                       
CONECT    7    5   18                                                       
CONECT    8    6   18                                                       
CONECT    9   12   20                                                       
CONECT   10   11   23                                                       
CONECT   11   10   26                                                       
CONECT   12    9   27                                                       
CONECT   13   21   22                                                       
CONECT   14   19   27                                                       
CONECT   15   27   33                                                       
CONECT   16    1    2   20                                                  
CONECT   17    5    6   22                                                  
CONECT   18    7    8   32                                                  
CONECT   19   14   24   26                                                  
CONECT   20    9   16   28                                                  
CONECT   21   13   24   29                                                  
CONECT   22   13   17   34                                                  
CONECT   23   10   27   30                                                  
CONECT   24   19   21   25                                                  
CONECT   25   24   31   34                                                  
CONECT   26    3   11   19   33                                             
CONECT   27   12   14   15   23                                             
CONECT   28   20                                                            
CONECT   29   21                                                            
CONECT   30   23                                                            
CONECT   31   25                                                            
CONECT   32    4   18                                                       
CONECT   33   15   26                                                       
CONECT   34   22   25                                                       
MASTER        0    0    0    0    0    0    0    0   34    0   74    0
END

Synonyms

Not Available

Molecular Formula

C₂₇H₃₂O₇

Average Mass

468.546

Monoisotopic Mass

468.21480337

IUPAC Name

9-[4-hydroxy-6-(4-methoxyphenyl)-2-oxo-2H-pyran-3-yl]-5-methyl-1-(4-methyl-3-oxopentyl)-6-oxabicyclo[3.2.2]nonan-2-one

Traditional Name

9-[4-hydroxy-6-(4-methoxyphenyl)-2-oxopyran-3-yl]-5-methyl-1-(4-methyl-3-oxopentyl)-6-oxabicyclo[3.2.2]nonan-2-one

CAS Registry Number

Not Available

SMILES

COC1=CC=C(C=C1)C1=CC(O)=C(C2CC3(CCC(=O)C(C)C)COC2(C)CCC3=O)C(=O)O1

InChI Identifier

InChI=1S/C27H32O7/c1-16(2)20(28)9-12-27-14-19(26(3,33-15-27)11-10-23(27)30)24-21(29)13-22(34-25(24)31)17-5-7-18(32-4)8-6-17/h5-8,13,16,19,29H,9-12,14-15H2,1-4H3

InChI Key

KOBHRKRRZILYFW-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as anisoles. These are organic compounds containing a methoxybenzene or a derivative thereof.

Kingdom

Super Class

Class

Sub Class

Direct Parent

Alternative Parents

Substituents

Phenoxy compound
Methoxybenzene
Anisole
Pyranone
Oxepane
Alkyl aryl ether
Pyran
Oxane
Monocyclic benzene moiety
Heteroaromatic compound
Vinylogous acid
Lactone
Ketone
Oxacycle
Organoheterocyclic compound
Ether
Dialkyl ether
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.0037 g/L	ALOGPS
logP	3.32	ALOGPS
logP	3.84	ChemAxon
logS	-5.1	ALOGPS
pKa (Strongest Acidic)	7.1	ChemAxon
pKa (Strongest Basic)	-4.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	99.13 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	128.07 m³·mol⁻¹	ChemAxon
Polarizability	50.61 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78444654

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139585487

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for Yaminterritrem A (MMDBc0009077)

MOL for #<Metabolite:0x00007f923c5ae788>

3D MOL for #<Metabolite:0x00007f923c5ae788>

3D SDF for #<Metabolite:0x00007f923c5ae788>

3D-SDF for #<Metabolite:0x00007f923c5ae788>

PDB for #<Metabolite:0x00007f923c5ae788>

3D PDB for #<Metabolite:0x00007f923c5ae788>

SMILES for #<Metabolite:0x00007f923c5ae788>

INCHI for #<Metabolite:0x00007f923c5ae788>

Structure for #<Metabolite:0x00007f923c5ae788>

3D Structure for #<Metabolite:0x00007f923c5ae788>