MiMeDB: Showing metabocard for Molybdopterin compound Z (MMDBc0016455)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-05-15 07:06:40 UTC

Update Date

2022-08-31 06:41:04 UTC

Metabolite ID

MMDBc0016455

Metabolite Identification

Common Name

Molybdopterin compound Z

Description

2,5-dihydroxy-4-(4-hydroxy-2-imino-1,2-dihydropteridine-6-carbonyl)-1,3,2λ⁵-dioxaphosphinan-2-one belongs to the class of organic compounds known as pterins and derivatives. These are polycyclic aromatic compounds containing a pterin moiety, which consist of a pteridine ring bearing a ketone and an amine group to form 2-aminopteridin-4(3H)-one. Based on a literature review very few articles have been published on 2,5-dihydroxy-4-(4-hydroxy-2-imino-1,2-dihydropteridine-6-carbonyl)-1,3,2λ⁵-dioxaphosphinan-2-one.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652305152109062D          

 23 25  0  0  0  0            999 V2000
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3848   -0.5558    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8545    0.3627    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -0.4125    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  1  0  0  0  0
  4  2  1  0  0  0  0
  6  3  1  0  0  0  0
  7  4  1  0  0  0  0
  7  6  1  0  0  0  0
  8  5  2  0  0  0  0
  9  5  1  0  0  0  0
 11 10  2  0  0  0  0
 12  1  2  0  0  0  0
 12  8  1  0  0  0  0
 13  3  2  0  0  0  0
 13  5  1  0  0  0  0
 14  8  1  0  0  0  0
 14 10  1  0  0  0  0
 15  9  2  0  0  0  0
 15 10  1  0  0  0  0
 16  4  1  0  0  0  0
 17  6  2  0  0  0  0
 18  9  1  0  0  0  0
 21  2  1  0  0  0  0
 22  7  1  0  0  0  0
 23 19  1  0  0  0  0
 23 20  2  0  0  0  0
 23 21  1  0  0  0  0
 23 22  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0016455

> <DATABASE_NAME>
MIME

> <SMILES>
OC1COP(O)(=O)OC1C(=O)C1=NC2=C(NC(=N)N=C2O)N=C1

> <INCHI_IDENTIFIER>
InChI=1S/C10H10N5O7P/c11-10-14-8-5(9(18)15-10)13-3(1-12-8)6(17)7-4(16)2-21-23(19,20)22-7/h1,4,7,16H,2H2,(H,19,20)(H3,11,12,14,15,18)

> <INCHI_KEY>
ONCCWDRMOZMNSM-UHFFFAOYSA-N

> <FORMULA>
C10H10N5O7P

> <MOLECULAR_WEIGHT>
343.192

> <EXACT_MASS>
343.03178468

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
33

> <JCHEM_AVERAGE_POLARIZABILITY>
28.28320685812078

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2,5-dihydroxy-4-(4-hydroxy-2-imino-1,2-dihydropteridine-6-carbonyl)-1,3,2lambda5-dioxaphosphinan-2-one

> <ALOGPS_LOGP>
-1.23

> <JCHEM_LOGP>
-1.470886211

> <ALOGPS_LOGS>
-2.15

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
7.122472359497156

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.7810848975398397

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6066796660354195

> <JCHEM_POLAR_SURFACE_AREA>
187.30999999999997

> <JCHEM_REFRACTIVITY>
83.22449999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.41e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2,5-dihydroxy-4-(4-hydroxy-2-imino-1H-pteridine-6-carbonyl)-1,3,2lambda5-dioxaphosphinan-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-MAY-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-MAY-21         0                                  
HETATM    1  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -5.335  -3.080   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.001  -2.310   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.667   0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -4.001  -0.770   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0       5.335  -3.080   0.000  0.00  0.00           N+0
HETATM   12  N   UNK     0       0.000  -3.080   0.000  0.00  0.00           N+0
HETATM   13  N   UNK     0       0.000   0.000   0.000  0.00  0.00           N+0
HETATM   14  N   UNK     0       2.667  -3.080   0.000  0.00  0.00           N+0
HETATM   15  N   UNK     0       4.001  -0.770   0.000  0.00  0.00           N+0
HETATM   16  O   UNK     0      -2.667  -3.080   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0      -2.667   1.540   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0       2.667   1.540   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0      -8.185  -1.037   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0      -7.195   0.677   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0      -6.668  -2.310   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0      -5.335   0.000   0.000  0.00  0.00           O+0
HETATM   23  P   UNK     0      -6.668  -0.770   0.000  0.00  0.00           P+0
CONECT    1    3   12                                                       
CONECT    2    4   21                                                       
CONECT    3    1    6   13                                                  
CONECT    4    2    7   16                                                  
CONECT    5    8    9   13                                                  
CONECT    6    3    7   17                                                  
CONECT    7    4    6   22                                                  
CONECT    8    5   12   14                                                  
CONECT    9    5   15   18                                                  
CONECT   10   11   14   15                                                  
CONECT   11   10                                                            
CONECT   12    1    8                                                       
CONECT   13    3    5                                                       
CONECT   14    8   10                                                       
CONECT   15    9   10                                                       
CONECT   16    4                                                            
CONECT   17    6                                                            
CONECT   18    9                                                            
CONECT   19   23                                                            
CONECT   20   23                                                            
CONECT   21    2   23                                                       
CONECT   22    7   23                                                       
CONECT   23   19   20   21   22                                             
MASTER        0    0    0    0    0    0    0    0   23    0   50    0
END

Synonyms

Not Available

Molecular Formula

C₁₀H₁₀N₅O₇P

Average Mass

343.192

Monoisotopic Mass

343.03178468

IUPAC Name

2,5-dihydroxy-4-(4-hydroxy-2-imino-1,2-dihydropteridine-6-carbonyl)-1,3,2lambda5-dioxaphosphinan-2-one

Traditional Name

2,5-dihydroxy-4-(4-hydroxy-2-imino-1H-pteridine-6-carbonyl)-1,3,2lambda5-dioxaphosphinan-2-one

CAS Registry Number

Not Available

SMILES

OC1COP(O)(=O)OC1C(=O)C1=NC2=C(NC(=N)N=C2O)N=C1

InChI Identifier

InChI=1S/C10H10N5O7P/c11-10-14-8-5(9(18)15-10)13-3(1-12-8)6(17)7-4(16)2-21-23(19,20)22-7/h1,4,7,16H,2H2,(H,19,20)(H3,11,12,14,15,18)

InChI Key

ONCCWDRMOZMNSM-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pterins and derivatives. These are polycyclic aromatic compounds containing a pterin moiety, which consist of a pteridine ring bearing a ketone and an amine group to form 2-aminopteridin-4(3H)-one.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Pteridines and derivatives

Sub Class

Pterins and derivatives

Direct Parent

Pterins and derivatives

Alternative Parents

Substituents

Pterin
Aryl alkyl ketone
Aryl ketone
Aminopyrimidine
Pyrimidone
Organic phosphoric acid derivative
Pyrazine
Pyrimidine
Heteroaromatic compound
Vinylogous amide
Ketone
Secondary alcohol
Oxacycle
Azacycle
Hydrocarbon derivative
Primary amine
Organooxygen compound
Organonitrogen compound
Organic oxide
Organic oxygen compound
Organic nitrogen compound
Alcohol
Amine
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	2.41 g/L	ALOGPS
logP	-1.2	ALOGPS
logP	-1.5	ChemAxon
logS	-2.2	ALOGPS
pKa (Strongest Acidic)	1.78	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	187.31 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	83.22 m³·mol⁻¹	ChemAxon
Polarizability	28.28 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Proteobacteria	1	Human ; Human feces; Human feces; pleural fluid plaque; bal; Human stool	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

2340331

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

3083002

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for Molybdopterin compound Z (MMDBc0016455)

MOL for #<Metabolite:0x00007f91e4150400>

3D MOL for #<Metabolite:0x00007f91e4150400>

3D SDF for #<Metabolite:0x00007f91e4150400>

3D-SDF for #<Metabolite:0x00007f91e4150400>

PDB for #<Metabolite:0x00007f91e4150400>

3D PDB for #<Metabolite:0x00007f91e4150400>

SMILES for #<Metabolite:0x00007f91e4150400>

INCHI for #<Metabolite:0x00007f91e4150400>

Structure for #<Metabolite:0x00007f91e4150400>

3D Structure for #<Metabolite:0x00007f91e4150400>