MiMeDB: Showing metabocard for (1S,2S)-3-oxo-2-(2Z-pentenyl)cyclopentane-1-octanoic acid (MMDBc0019396)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-05-15 09:28:41 UTC

Update Date

2022-08-31 06:45:21 UTC

Metabolite ID

MMDBc0019396

Metabolite Identification

Common Name

(1S,2S)-3-oxo-2-(2Z-pentenyl)cyclopentane-1-octanoic acid

Description

8-[(1S,2S)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl]octanoic acid, also known as OPC-8:0, belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid. Based on a literature review very few articles have been published on 8-[(1S,2S)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl]octanoic acid.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

HMDB0301805
     RDKit          3D
3-Oxo-2-(2-entenyl)cyclopentaneoctanoic acid
 51 51  0  0  0  0  0  0  0  0999 V2000
   -5.9938    0.9690    0.6703 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8685    1.8888    0.2240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4553    1.6496   -1.1523 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2506    1.2982   -1.4812 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1581    1.0984   -0.5193 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7130   -0.3381   -0.6654 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9061   -1.2207   -0.3490 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6916   -1.7330   -1.1107 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9236   -1.3373    1.1160 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5028   -1.2430    1.5464 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7288   -0.8309    0.3147 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4349   -0.0008    0.6600 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3517    0.3217   -0.4939 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9212   -0.9234   -1.1323 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7280   -1.7602   -0.1767 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8934   -1.0390    0.4039 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8316   -0.5927   -0.6717 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9945    0.1198    0.0425 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4064    1.2529    0.7810 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0511    2.2741    0.1601 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2547    1.1745    2.1437 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6829   -0.0810    0.6406 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2207    1.2300    1.7231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8843    1.1234    0.0263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3517    2.9212    0.2260 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1206    1.9327    0.9962 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2278    1.7799   -1.9552 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9973    1.1311   -2.5367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3169    1.7532   -0.9199 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3409    1.3878    0.5105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4730   -0.5169   -1.7217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3537   -2.3072    1.4674 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5263   -0.5203    1.5719 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1233   -2.1821    1.9958 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3952   -0.4601    2.3517 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3463   -1.8230   -0.1062 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1955    0.9497    1.1795 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0863   -0.5532    1.4018 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2348    0.8701   -0.0603 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8810    0.9934   -1.1991 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5758   -0.6032   -1.9643 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1151   -1.5949   -1.5117 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0606   -2.6698   -0.7541 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0372   -2.1665    0.5938 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5909   -0.1792    1.0330 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3950   -1.7680    1.1106 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3312    0.1250   -1.3479 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2562   -1.4115   -1.2551 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7572    0.4323   -0.6857 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4487   -0.6354    0.7236 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7206    1.8148    2.7077 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  2  0
 19 21  1  0
 11  6  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
  2 25  1  0
  2 26  1  0
  3 27  1  0
  4 28  1  0
  5 29  1  0
  5 30  1  0
  6 31  1  6
  9 32  1  0
  9 33  1  0
 10 34  1  0
 10 35  1  0
 11 36  1  6
 12 37  1  0
 12 38  1  0
 13 39  1  0
 13 40  1  0
 14 41  1  0
 14 42  1  0
 15 43  1  0
 15 44  1  0
 16 45  1  0
 16 46  1  0
 17 47  1  0
 17 48  1  0
 18 49  1  0
 18 50  1  0
 21 51  1  0
M  END


  Mrv0541 02241212152D          

 21 21  0  0  0  0            999 V2000
   -4.2723    1.1732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9397    0.6883    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6848   -0.0963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8598   -0.0963    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6049    0.6883    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2723    1.9982    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8203    0.9432    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3709    0.2513    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5471    0.2945    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1725    1.0295    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3487    1.0727    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3749   -0.7637    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5499   -0.7637    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1374   -1.4782    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3124   -1.4782    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8999   -2.1927    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0749   -2.1927    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3376   -2.9072    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1626   -2.9072    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5751   -3.6216    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5751   -2.1927    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  5  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  1  6  2  0  0  0  0
  5  7  1  1  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  4 12  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  2  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0019396

> <DATABASE_NAME>
MIME

> <SMILES>
CC\C=C/C[C@H]1[C@@H](CCCCCCCC(O)=O)CCC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C18H30O3/c1-2-3-7-11-16-15(13-14-17(16)19)10-8-5-4-6-9-12-18(20)21/h3,7,15-16H,2,4-6,8-14H2,1H3,(H,20,21)/b7-3-/t15-,16-/m0/s1

> <INCHI_KEY>
BZXZFDKIRZBJEP-JMTMCXQRSA-N

> <FORMULA>
C18H30O3

> <MOLECULAR_WEIGHT>
294.429

> <EXACT_MASS>
294.219494826

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_AVERAGE_POLARIZABILITY>
35.91437265933209

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
8-[(1S,2S)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl]octanoic acid

> <ALOGPS_LOGP>
5.20

> <JCHEM_LOGP>
5.081722867666667

> <ALOGPS_LOGS>
-5.04

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.7217866991076605

> <JCHEM_PKA_STRONGEST_BASIC>
-7.422117548650318

> <JCHEM_POLAR_SURFACE_AREA>
54.37

> <JCHEM_REFRACTIVITY>
86.1625

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.69e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
8-[(1S,2S)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl]octanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0301805
     RDKit          3D
3-Oxo-2-(2-entenyl)cyclopentaneoctanoic acid
 51 51  0  0  0  0  0  0  0  0999 V2000
   -5.9938    0.9690    0.6703 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8685    1.8888    0.2240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4553    1.6496   -1.1523 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2506    1.2982   -1.4812 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1581    1.0984   -0.5193 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7130   -0.3381   -0.6654 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9061   -1.2207   -0.3490 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6916   -1.7330   -1.1107 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9236   -1.3373    1.1160 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5028   -1.2430    1.5464 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7288   -0.8309    0.3147 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4349   -0.0008    0.6600 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3517    0.3217   -0.4939 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9212   -0.9234   -1.1323 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7280   -1.7602   -0.1767 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8934   -1.0390    0.4039 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8316   -0.5927   -0.6717 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9945    0.1198    0.0425 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4064    1.2529    0.7810 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0511    2.2741    0.1601 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2547    1.1745    2.1437 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6829   -0.0810    0.6406 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2207    1.2300    1.7231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8843    1.1234    0.0263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3517    2.9212    0.2260 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1206    1.9327    0.9962 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2278    1.7799   -1.9552 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9973    1.1311   -2.5367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3169    1.7532   -0.9199 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3409    1.3878    0.5105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4730   -0.5169   -1.7217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3537   -2.3072    1.4674 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5263   -0.5203    1.5719 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1233   -2.1821    1.9958 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3952   -0.4601    2.3517 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3463   -1.8230   -0.1062 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1955    0.9497    1.1795 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0863   -0.5532    1.4018 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2348    0.8701   -0.0603 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8810    0.9934   -1.1991 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5758   -0.6032   -1.9643 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1151   -1.5949   -1.5117 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0606   -2.6698   -0.7541 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0372   -2.1665    0.5938 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5909   -0.1792    1.0330 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3950   -1.7680    1.1106 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3312    0.1250   -1.3479 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2562   -1.4115   -1.2551 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7572    0.4323   -0.6857 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4487   -0.6354    0.7236 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7206    1.8148    2.7077 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  2  0
 19 21  1  0
 11  6  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
  2 25  1  0
  2 26  1  0
  3 27  1  0
  4 28  1  0
  5 29  1  0
  5 30  1  0
  6 31  1  6
  9 32  1  0
  9 33  1  0
 10 34  1  0
 10 35  1  0
 11 36  1  6
 12 37  1  0
 12 38  1  0
 13 39  1  0
 13 40  1  0
 14 41  1  0
 14 42  1  0
 15 43  1  0
 15 44  1  0
 16 45  1  0
 16 46  1  0
 17 47  1  0
 17 48  1  0
 18 49  1  0
 18 50  1  0
 21 51  1  0
M  END

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0      -7.975   2.190   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -9.221   1.285   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -8.745  -0.180   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -7.205  -0.180   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -6.729   1.285   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0      -7.975   3.730   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      -5.265   1.761   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -4.426   0.469   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -2.888   0.550   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.189   1.922   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.651   2.002   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -6.300  -1.426   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -4.760  -1.426   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -3.990  -2.759   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.450  -2.759   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.680  -4.093   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.140  -4.093   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.630  -5.427   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.170  -5.427   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       2.940  -6.760   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0       2.940  -4.093   0.000  0.00  0.00           O+0
CONECT    1    2    5    6                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5   12                                                  
CONECT    5    1    4    7                                                  
CONECT    6    1                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10                                                            
CONECT   12    4   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19                                                            
MASTER        0    0    0    0    0    0    0    0   21    0   42    0
END

COMPND    HMDB0301805
HETATM    1  C1  UNL     1      -5.994   0.969   0.670  1.00  0.00           C  
HETATM    2  C2  UNL     1      -4.868   1.889   0.224  1.00  0.00           C  
HETATM    3  C3  UNL     1      -4.455   1.650  -1.152  1.00  0.00           C  
HETATM    4  C4  UNL     1      -3.251   1.298  -1.481  1.00  0.00           C  
HETATM    5  C5  UNL     1      -2.158   1.098  -0.519  1.00  0.00           C  
HETATM    6  C6  UNL     1      -1.713  -0.338  -0.665  1.00  0.00           C  
HETATM    7  C7  UNL     1      -2.906  -1.221  -0.349  1.00  0.00           C  
HETATM    8  O1  UNL     1      -3.692  -1.733  -1.111  1.00  0.00           O  
HETATM    9  C8  UNL     1      -2.924  -1.337   1.116  1.00  0.00           C  
HETATM   10  C9  UNL     1      -1.503  -1.243   1.546  1.00  0.00           C  
HETATM   11  C10 UNL     1      -0.729  -0.831   0.315  1.00  0.00           C  
HETATM   12  C11 UNL     1       0.435  -0.001   0.660  1.00  0.00           C  
HETATM   13  C12 UNL     1       1.352   0.322  -0.494  1.00  0.00           C  
HETATM   14  C13 UNL     1       1.921  -0.923  -1.132  1.00  0.00           C  
HETATM   15  C14 UNL     1       2.728  -1.760  -0.177  1.00  0.00           C  
HETATM   16  C15 UNL     1       3.893  -1.039   0.404  1.00  0.00           C  
HETATM   17  C16 UNL     1       4.832  -0.593  -0.672  1.00  0.00           C  
HETATM   18  C17 UNL     1       5.995   0.120   0.042  1.00  0.00           C  
HETATM   19  C18 UNL     1       5.406   1.253   0.781  1.00  0.00           C  
HETATM   20  O2  UNL     1       5.051   2.274   0.160  1.00  0.00           O  
HETATM   21  O3  UNL     1       5.255   1.174   2.144  1.00  0.00           O  
HETATM   22  H1  UNL     1      -5.683  -0.081   0.641  1.00  0.00           H  
HETATM   23  H2  UNL     1      -6.221   1.230   1.723  1.00  0.00           H  
HETATM   24  H3  UNL     1      -6.884   1.123   0.026  1.00  0.00           H  
HETATM   25  H4  UNL     1      -5.352   2.921   0.226  1.00  0.00           H  
HETATM   26  H5  UNL     1      -4.121   1.933   0.996  1.00  0.00           H  
HETATM   27  H6  UNL     1      -5.228   1.780  -1.955  1.00  0.00           H  
HETATM   28  H7  UNL     1      -2.997   1.131  -2.537  1.00  0.00           H  
HETATM   29  H8  UNL     1      -1.317   1.753  -0.920  1.00  0.00           H  
HETATM   30  H9  UNL     1      -2.341   1.388   0.510  1.00  0.00           H  
HETATM   31  H10 UNL     1      -1.473  -0.517  -1.722  1.00  0.00           H  
HETATM   32  H11 UNL     1      -3.354  -2.307   1.467  1.00  0.00           H  
HETATM   33  H12 UNL     1      -3.526  -0.520   1.572  1.00  0.00           H  
HETATM   34  H13 UNL     1      -1.123  -2.182   1.996  1.00  0.00           H  
HETATM   35  H14 UNL     1      -1.395  -0.460   2.352  1.00  0.00           H  
HETATM   36  H15 UNL     1      -0.346  -1.823  -0.106  1.00  0.00           H  
HETATM   37  H16 UNL     1       0.195   0.950   1.180  1.00  0.00           H  
HETATM   38  H17 UNL     1       1.086  -0.553   1.402  1.00  0.00           H  
HETATM   39  H18 UNL     1       2.235   0.870  -0.060  1.00  0.00           H  
HETATM   40  H19 UNL     1       0.881   0.993  -1.199  1.00  0.00           H  
HETATM   41  H20 UNL     1       2.576  -0.603  -1.964  1.00  0.00           H  
HETATM   42  H21 UNL     1       1.115  -1.595  -1.512  1.00  0.00           H  
HETATM   43  H22 UNL     1       3.061  -2.670  -0.754  1.00  0.00           H  
HETATM   44  H23 UNL     1       2.037  -2.166   0.594  1.00  0.00           H  
HETATM   45  H24 UNL     1       3.591  -0.179   1.033  1.00  0.00           H  
HETATM   46  H25 UNL     1       4.395  -1.768   1.111  1.00  0.00           H  
HETATM   47  H26 UNL     1       4.331   0.125  -1.348  1.00  0.00           H  
HETATM   48  H27 UNL     1       5.256  -1.411  -1.255  1.00  0.00           H  
HETATM   49  H28 UNL     1       6.757   0.432  -0.686  1.00  0.00           H  
HETATM   50  H29 UNL     1       6.449  -0.635   0.724  1.00  0.00           H  
HETATM   51  H30 UNL     1       4.721   1.815   2.708  1.00  0.00           H  
CONECT    1    2   22   23   24
CONECT    2    3   25   26
CONECT    3    4    4   27
CONECT    4    5   28
CONECT    5    6   29   30
CONECT    6    7   11   31
CONECT    7    8    8    9
CONECT    9   10   32   33
CONECT   10   11   34   35
CONECT   11   12   36
CONECT   12   13   37   38
CONECT   13   14   39   40
CONECT   14   15   41   42
CONECT   15   16   43   44
CONECT   16   17   45   46
CONECT   17   18   47   48
CONECT   18   19   49   50
CONECT   19   20   20   21
CONECT   21   51
END

HMDB0301805
     RDKit          3D
3-Oxo-2-(2-entenyl)cyclopentaneoctanoic acid
 51 51  0  0  0  0  0  0  0  0999 V2000
   -5.9938    0.9690    0.6703 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8685    1.8888    0.2240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4553    1.6496   -1.1523 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2506    1.2982   -1.4812 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1581    1.0984   -0.5193 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7130   -0.3381   -0.6654 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9061   -1.2207   -0.3490 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6916   -1.7330   -1.1107 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9236   -1.3373    1.1160 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5028   -1.2430    1.5464 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7288   -0.8309    0.3147 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4349   -0.0008    0.6600 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3517    0.3217   -0.4939 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9212   -0.9234   -1.1323 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7280   -1.7602   -0.1767 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8934   -1.0390    0.4039 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8316   -0.5927   -0.6717 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9945    0.1198    0.0425 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4064    1.2529    0.7810 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0511    2.2741    0.1601 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2547    1.1745    2.1437 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6829   -0.0810    0.6406 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2207    1.2300    1.7231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8843    1.1234    0.0263 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3517    2.9212    0.2260 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1206    1.9327    0.9962 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2278    1.7799   -1.9552 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9973    1.1311   -2.5367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3169    1.7532   -0.9199 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3409    1.3878    0.5105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4730   -0.5169   -1.7217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3537   -2.3072    1.4674 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5263   -0.5203    1.5719 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1233   -2.1821    1.9958 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3952   -0.4601    2.3517 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3463   -1.8230   -0.1062 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1955    0.9497    1.1795 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0863   -0.5532    1.4018 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2348    0.8701   -0.0603 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8810    0.9934   -1.1991 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5758   -0.6032   -1.9643 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1151   -1.5949   -1.5117 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0606   -2.6698   -0.7541 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0372   -2.1665    0.5938 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5909   -0.1792    1.0330 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3950   -1.7680    1.1106 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3312    0.1250   -1.3479 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2562   -1.4115   -1.2551 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7572    0.4323   -0.6857 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4487   -0.6354    0.7236 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7206    1.8148    2.7077 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  2  0
 19 21  1  0
 11  6  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
  2 25  1  0
  2 26  1  0
  3 27  1  0
  4 28  1  0
  5 29  1  0
  5 30  1  0
  6 31  1  6
  9 32  1  0
  9 33  1  0
 10 34  1  0
 10 35  1  0
 11 36  1  6
 12 37  1  0
 12 38  1  0
 13 39  1  0
 13 40  1  0
 14 41  1  0
 14 42  1  0
 15 43  1  0
 15 44  1  0
 16 45  1  0
 16 46  1  0
 17 47  1  0
 17 48  1  0
 18 49  1  0
 18 50  1  0
 21 51  1  0
M  END

Synonyms

Value	Source
OPC-8:0	Kegg
8-[(1S,2S)-3-oxo-2-[(2Z)-Pent-2-en-1-yl]cyclopentyl]octanoate	Generator
3-oxo-2-(2-Entenyl)cyclopentaneoctanoate	Generator

Molecular Formula

C₁₈H₃₀O₃

Average Mass

294.429

Monoisotopic Mass

294.219494826

IUPAC Name

8-[(1S,2S)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl]octanoic acid

Traditional Name

8-[(1S,2S)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl]octanoic acid

CAS Registry Number

Not Available

SMILES

CC\C=C/C[C@H]1[C@@H](CCCCCCCC(O)=O)CCC1=O

InChI Identifier

InChI=1S/C18H30O3/c1-2-3-7-11-16-15(13-14-17(16)19)10-8-5-4-6-9-12-18(20)21/h3,7,15-16H,2,4-6,8-14H2,1H3,(H,20,21)/b7-3-/t15-,16-/m0/s1

InChI Key

BZXZFDKIRZBJEP-JMTMCXQRSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as prostaglandins and related compounds. These are unsaturated carboxylic acids consisting of a 20 carbon skeleton that also contains a five member ring, and are based upon the fatty acid arachidonic acid.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Eicosanoids

Direct Parent

Prostaglandins and related compounds

Alternative Parents

Substituents

Prostaglandin skeleton
Medium-chain fatty acid
Cyclic ketone
Ketone
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

12-oxophytodienoic acid metabolites (LMFA02010007 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.0027 g/L	ALOGPS
logP	5.2	ALOGPS
logP	5.08	ChemAxon
logS	-5	ALOGPS
pKa (Strongest Acidic)	4.72	ChemAxon
pKa (Strongest Basic)	-7.4	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	54.37 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	86.16 m³·mol⁻¹	ChemAxon
Polarizability	35.91 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces	Metabolic reconstruction

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

HMDB0301805

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB001433

KNApSAcK ID

Not Available

Chemspider ID

4444310

KEGG Compound ID

C04780

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

van Santen JA, Poynton EF, Iskakova D, McMann E, Alsup TA, Clark TN, Fergusson CH, Fewer DP, Hughes AH, McCadden CA, Parra J, Soldatou S, Rudolf JD, Janssen EM, Duncan KR, Linington RG: The Natural Products Atlas 2.0: a database of microbially-derived natural products. Nucleic Acids Res. 2022 Jan 7;50(D1):D1317-D1323. doi: 10.1093/nar/gkab941. [PubMed:34718710 ]

Showing metabocard for (1S,2S)-3-oxo-2-(2Z-pentenyl)cyclopentane-1-octanoic acid (MMDBc0019396)

MOL for #<Metabolite:0x00007f9239797c00>

3D MOL for #<Metabolite:0x00007f9239797c00>

3D SDF for #<Metabolite:0x00007f9239797c00>

3D-SDF for #<Metabolite:0x00007f9239797c00>

PDB for #<Metabolite:0x00007f9239797c00>

3D PDB for #<Metabolite:0x00007f9239797c00>

SMILES for #<Metabolite:0x00007f9239797c00>

INCHI for #<Metabolite:0x00007f9239797c00>

Structure for #<Metabolite:0x00007f9239797c00>

3D Structure for #<Metabolite:0x00007f9239797c00>