| MMDBm0000028 | Bacillus halodurans C-125 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000114 | Clostridium acetobutylicum ATCC 824 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000162 | Escherichia coli CFT073 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000167 | Escherichia coli SMS-3-5 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000169 | Escherichia coli UTI89 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000368 | Shigella flexneri | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000374 | Aggregatibacter actinomycetemcomitans | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000383 | Fusobacterium mortiferum | Eubacteria | Fusobacteria | Human Feces | Not Available | RHEA |
| MMDBm0000417 | Leuconostoc mesenteroides | Eubacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0000528 | Streptomyces lividans | Eubacteria | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0000636 | Pseudomonas savastanoi | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0000763 | Prevotella bryantii | Eubacteria | Bacteroidetes | Human Feces | Not Available | RHEA |
| MMDBm0001066 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001200 | Agrobacterium tumefaciens str. C58 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001201 | Agrobacterium vitis S4 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001202 | Agrobacterium radiobacter K84 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001220 | Anabaena variabilis ATCC 29413 | Eubacteria | Cyanobacteria | Not Available | Not Available | RHEA |
| MMDBm0001236 | Aromatoleum aromaticum EbN1 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001248 | Bacillus subtilis subsp. subtilis str. 168 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0001295 | Borrelia burgdorferi B31 | Eubacteria | Spirochaetes | Human | Not Available | RHEA |
| MMDBm0001312 | Brucella melitensis bv. 1 str. 16M | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001313 | Brucella suis 1330 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001314 | Brucella abortus bv. 1 str. 9-941 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001315 | Brucella melitensis biovar Abortus 2308 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
