MiMeDB: Showing metabocard for icosaprenyl diphosphate (MMDBc0033079)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-19 04:33:50 UTC

Update Date

2022-08-31 22:25:46 UTC

Metabolite ID

MMDBc0033079

Metabolite Identification

Common Name

icosaprenyl diphosphate

Description

Icosaprenyl diphosphate is a prenol lipid, specifically an isoprenoid-disphosphate. Prenol lipids are synthesized from the 5-carbon precursors isopentenyl diphosphate and dimethylallyl diphosphate that are produced mainly via the mevalonic acid pathway. Simple isoprenoids like Icosaprenyl diphosphate are formed by the successive addition of C5 units.[Wikipedia]

Structure

MOL SDF PDB SMILES InChI


  Mrv0541 02241222302D          

128127  0  0  0  0            999 V2000
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M  END


  Mrv0541 02241222302D          

128127  0  0  0  0            999 V2000
   49.0515  -13.3110    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
> <DATABASE_ID>
MMDBc0033079

> <DATABASE_NAME>
MIME

> <SMILES>
[H]C(CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])COP(O)(=O)OP(O)(O)=O)=C(C)CCC=C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C100H164O7P2/c1-81(2)41-22-42-82(3)43-23-44-83(4)45-24-46-84(5)47-25-48-85(6)49-26-50-86(7)51-27-52-87(8)53-28-54-88(9)55-29-56-89(10)57-30-58-90(11)59-31-60-91(12)61-32-62-92(13)63-33-64-93(14)65-34-66-94(15)67-35-68-95(16)69-36-70-96(17)71-37-72-97(18)73-38-74-98(19)75-39-76-99(20)77-40-78-100(21)79-80-106-109(104,105)107-108(101,102)103/h41,43,45,47,49,51,53,55,57,59,61,63,65,67,69,71,73,75,77,79H,22-40,42,44,46,48,50,52,54,56,58,60,62,64,66,68,70,72,74,76,78,80H2,1-21H3,(H,104,105)(H2,101,102,103)

> <INCHI_KEY>
KDALOUQNOWKDTH-UHFFFAOYSA-N

> <FORMULA>
C100H164O7P2

> <MOLECULAR_WEIGHT>
1540.3155

> <EXACT_MASS>
1539.195230626

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_AVERAGE_POLARIZABILITY>
201.52466443302694

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
({hydroxy[(3,7,11,15,19,23,27,31,35,39,43,47,51,55,59,63,67,71,75,79-icosamethyloctaconta-2,6,10,14,18,22,26,30,34,38,42,46,50,54,58,62,66,70,74,78-icosaen-1-yl)oxy]phosphoryl}oxy)phosphonic acid

> <ALOGPS_LOGP>
9.71

> <JCHEM_LOGP>
31.831875735666664

> <ALOGPS_LOGS>
-6.50

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
3.1843406094078315

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.7672186885241006

> <JCHEM_POLAR_SURFACE_AREA>
113.29

> <JCHEM_REFRACTIVITY>
501.3746999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
62

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.89e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
eicosaprenyl diphosphate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0      91.563 -24.847   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      91.563 -23.307   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      92.897 -22.537   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      92.897 -20.997   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      94.231 -20.228   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      95.565 -20.999   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      94.231 -18.688   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      95.565 -17.918   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      95.565 -16.378   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      96.899 -15.608   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      98.232 -16.378   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      96.899 -14.068   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      98.233 -13.298   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      98.232 -11.758   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      99.566 -10.988   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0     100.900 -11.758   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      99.566  -9.448   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0     100.900  -8.678   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0     100.900  -7.138   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0     102.234  -6.368   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0     103.568  -7.138   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0     102.234  -4.828   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0     103.568  -4.058   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      92.896 -25.617   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0     103.568  -2.518   0.000  0.00  0.00           O+0
HETATM   26  P   UNK     0     104.901  -1.748   0.000  0.00  0.00           P+0
HETATM   27  O   UNK     0     106.235  -2.518   0.000  0.00  0.00           O+0
HETATM   28  P   UNK     0     107.569  -1.748   0.000  0.00  0.00           P+0
HETATM   29  O   UNK     0     108.902  -2.518   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0     107.569  -0.208   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0     104.901  -0.208   0.000  0.00  0.00           O+0
HETATM   32  O   UNK     0     105.300  -3.236   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0     107.967  -3.236   0.000  0.00  0.00           O+0
HETATM   34  H   UNK     0     100.900  -4.058   0.000  0.00  0.00           H+0
HETATM   35  H   UNK     0      98.233  -8.678   0.000  0.00  0.00           H+0
HETATM   36  H   UNK     0      95.565 -13.298   0.000  0.00  0.00           H+0
HETATM   37  H   UNK     0      92.898 -17.918   0.000  0.00  0.00           H+0
HETATM   38  C   UNK     0      86.228 -24.844   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      87.562 -25.615   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      88.895 -24.846   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      90.229 -25.617   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      86.229 -23.305   0.000  0.00  0.00           C+0
HETATM   43  H   UNK     0      90.230 -22.537   0.000  0.00  0.00           H+0
HETATM   44  C   UNK     0      84.894 -25.613   0.000  0.00  0.00           C+0
HETATM   45  H   UNK     0      87.560 -27.155   0.000  0.00  0.00           H+0
HETATM   46  C   UNK     0      80.893 -24.841   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      82.227 -25.612   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      83.561 -24.843   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      80.894 -23.301   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      79.559 -25.610   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      75.559 -24.838   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      76.892 -25.609   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      78.226 -24.839   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      75.559 -23.298   0.000  0.00  0.00           C+0
HETATM   55  H   UNK     0      82.226 -27.152   0.000  0.00  0.00           H+0
HETATM   56  C   UNK     0      74.224 -25.607   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      70.224 -24.835   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      71.557 -25.605   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      72.891 -24.836   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0      70.225 -23.295   0.000  0.00  0.00           C+0
HETATM   61  H   UNK     0      76.891 -27.148   0.000  0.00  0.00           H+0
HETATM   62  C   UNK     0      68.890 -25.604   0.000  0.00  0.00           C+0
HETATM   63  C   UNK     0      66.225 -22.521   0.000  0.00  0.00           C+0
HETATM   64  C   UNK     0      67.558 -23.293   0.000  0.00  0.00           C+0
HETATM   65  C   UNK     0      67.557 -24.833   0.000  0.00  0.00           C+0
HETATM   66  C   UNK     0      64.891 -23.290   0.000  0.00  0.00           C+0
HETATM   67  H   UNK     0      71.556 -27.145   0.000  0.00  0.00           H+0
HETATM   68  C   UNK     0      66.226 -20.982   0.000  0.00  0.00           C+0
HETATM   69  C   UNK     0      63.562 -17.899   0.000  0.00  0.00           C+0
HETATM   70  C   UNK     0      64.895 -18.671   0.000  0.00  0.00           C+0
HETATM   71  C   UNK     0      64.893 -20.211   0.000  0.00  0.00           C+0
HETATM   72  C   UNK     0      62.228 -18.668   0.000  0.00  0.00           C+0
HETATM   73  H   UNK     0      68.893 -22.525   0.000  0.00  0.00           H+0
HETATM   74  C   UNK     0      63.563 -16.359   0.000  0.00  0.00           C+0
HETATM   75  C   UNK     0      60.899 -13.277   0.000  0.00  0.00           C+0
HETATM   76  C   UNK     0      62.231 -14.048   0.000  0.00  0.00           C+0
HETATM   77  C   UNK     0      62.230 -15.588   0.000  0.00  0.00           C+0
HETATM   78  C   UNK     0      60.899 -11.737   0.000  0.00  0.00           C+0
HETATM   79  C   UNK     0      59.564 -14.046   0.000  0.00  0.00           C+0
HETATM   80  H   UNK     0      66.229 -17.902   0.000  0.00  0.00           H+0
HETATM   81  C   UNK     0      56.899 -10.963   0.000  0.00  0.00           C+0
HETATM   82  C   UNK     0      58.233 -11.735   0.000  0.00  0.00           C+0
HETATM   83  C   UNK     0      59.567 -10.966   0.000  0.00  0.00           C+0
HETATM   84  C   UNK     0      55.565 -11.732   0.000  0.00  0.00           C+0
HETATM   85  C   UNK     0      56.901  -9.423   0.000  0.00  0.00           C+0
HETATM   86  H   UNK     0      63.566 -13.280   0.000  0.00  0.00           H+0
HETATM   87  C   UNK     0      51.565 -10.958   0.000  0.00  0.00           C+0
HETATM   88  C   UNK     0      52.898 -11.729   0.000  0.00  0.00           C+0
HETATM   89  C   UNK     0      54.232 -10.961   0.000  0.00  0.00           C+0
HETATM   90  C   UNK     0      50.230 -11.727   0.000  0.00  0.00           C+0
HETATM   91  C   UNK     0      51.566  -9.418   0.000  0.00  0.00           C+0
HETATM   92  H   UNK     0      58.231 -13.274   0.000  0.00  0.00           H+0
HETATM   93  C   UNK     0      46.230 -10.953   0.000  0.00  0.00           C+0
HETATM   94  C   UNK     0      47.563 -11.724   0.000  0.00  0.00           C+0
HETATM   95  C   UNK     0      48.897 -10.956   0.000  0.00  0.00           C+0
HETATM   96  C   UNK     0      44.896 -11.722   0.000  0.00  0.00           C+0
HETATM   97  C   UNK     0      46.231  -9.413   0.000  0.00  0.00           C+0
HETATM   98  H   UNK     0      52.896 -13.269   0.000  0.00  0.00           H+0
HETATM   99  C   UNK     0      40.895 -10.948   0.000  0.00  0.00           C+0
HETATM  100  C   UNK     0      42.228 -11.719   0.000  0.00  0.00           C+0
HETATM  101  C   UNK     0      43.563 -10.950   0.000  0.00  0.00           C+0
HETATM  102  C   UNK     0      39.560 -11.717   0.000  0.00  0.00           C+0
HETATM  103  C   UNK     0      40.896  -9.408   0.000  0.00  0.00           C+0
HETATM  104  H   UNK     0      47.562 -13.264   0.000  0.00  0.00           H+0
HETATM  105  C   UNK     0      38.224 -15.566   0.000  0.00  0.00           C+0
HETATM  106  C   UNK     0      38.225 -14.026   0.000  0.00  0.00           C+0
HETATM  107  C   UNK     0      39.559 -13.257   0.000  0.00  0.00           C+0
HETATM  108  C   UNK     0      36.889 -16.335   0.000  0.00  0.00           C+0
HETATM  109  C   UNK     0      39.556 -16.337   0.000  0.00  0.00           C+0
HETATM  110  H   UNK     0      42.227 -13.259   0.000  0.00  0.00           H+0
HETATM  111  C   UNK     0      35.553 -20.184   0.000  0.00  0.00           C+0
HETATM  112  C   UNK     0      35.554 -18.644   0.000  0.00  0.00           C+0
HETATM  113  C   UNK     0      36.888 -17.875   0.000  0.00  0.00           C+0
HETATM  114  C   UNK     0      34.218 -20.953   0.000  0.00  0.00           C+0
HETATM  115  C   UNK     0      36.885 -20.955   0.000  0.00  0.00           C+0
HETATM  116  H   UNK     0      36.892 -13.254   0.000  0.00  0.00           H+0
HETATM  117  C   UNK     0      32.881 -24.802   0.000  0.00  0.00           C+0
HETATM  118  C   UNK     0      32.882 -23.262   0.000  0.00  0.00           C+0
HETATM  119  C   UNK     0      34.217 -22.493   0.000  0.00  0.00           C+0
HETATM  120  C   UNK     0      31.547 -25.571   0.000  0.00  0.00           C+0
HETATM  121  C   UNK     0      34.214 -25.573   0.000  0.00  0.00           C+0
HETATM  122  H   UNK     0      34.221 -17.872   0.000  0.00  0.00           H+0
HETATM  123  C   UNK     0      30.210 -29.420   0.000  0.00  0.00           C+0
HETATM  124  C   UNK     0      30.211 -27.880   0.000  0.00  0.00           C+0
HETATM  125  C   UNK     0      31.546 -27.111   0.000  0.00  0.00           C+0
HETATM  126  C   UNK     0      28.875 -30.189   0.000  0.00  0.00           C+0
HETATM  127  C   UNK     0      31.543 -30.191   0.000  0.00  0.00           C+0
HETATM  128  H   UNK     0      31.549 -22.492   0.000  0.00  0.00           H+0
CONECT    1    2   41   24                                                  
CONECT    2    1    3   43                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   37                                                  
CONECT    8    7    9                                                       
CONECT    9   10    8                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   36                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   35                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   34                                                  
CONECT   23   22   25                                                       
CONECT   24    1                                                            
CONECT   25   23   26                                                       
CONECT   26   25   27   31   32                                             
CONECT   27   26   28                                                       
CONECT   28   27   29   30   33                                             
CONECT   29   28                                                            
CONECT   30   28                                                            
CONECT   31   26                                                            
CONECT   32   26                                                            
CONECT   33   28                                                            
CONECT   34   22                                                            
CONECT   35   17                                                            
CONECT   36   12                                                            
CONECT   37    7                                                            
CONECT   38   39   44   42                                                  
CONECT   39   38   40   45                                                  
CONECT   40   39   41                                                       
CONECT   41    1   40                                                       
CONECT   42   38                                                            
CONECT   43    2                                                            
CONECT   44   38   48                                                       
CONECT   45   39                                                            
CONECT   46   47   50   49                                                  
CONECT   47   46   48   55                                                  
CONECT   48   47   44                                                       
CONECT   49   46                                                            
CONECT   50   46   53                                                       
CONECT   51   52   56   54                                                  
CONECT   52   51   53   61                                                  
CONECT   53   52   50                                                       
CONECT   54   51                                                            
CONECT   55   47                                                            
CONECT   56   51   59                                                       
CONECT   57   58   62   60                                                  
CONECT   58   57   59   67                                                  
CONECT   59   58   56                                                       
CONECT   60   57                                                            
CONECT   61   52                                                            
CONECT   62   57   65                                                       
CONECT   63   64   68   66                                                  
CONECT   64   63   65   73                                                  
CONECT   65   64   62                                                       
CONECT   66   63                                                            
CONECT   67   58                                                            
CONECT   68   63   71                                                       
CONECT   69   70   74   72                                                  
CONECT   70   69   71   80                                                  
CONECT   71   70   68                                                       
CONECT   72   69                                                            
CONECT   73   64                                                            
CONECT   74   69   77                                                       
CONECT   75   76   78   79                                                  
CONECT   76   75   77   86                                                  
CONECT   77   76   74                                                       
CONECT   78   75   83                                                       
CONECT   79   75                                                            
CONECT   80   70                                                            
CONECT   81   82   84   85                                                  
CONECT   82   81   83   92                                                  
CONECT   83   78   82                                                       
CONECT   84   81   89                                                       
CONECT   85   81                                                            
CONECT   86   76                                                            
CONECT   87   88   90   91                                                  
CONECT   88   87   89   98                                                  
CONECT   89   84   88                                                       
CONECT   90   87   95                                                       
CONECT   91   87                                                            
CONECT   92   82                                                            
CONECT   93   94   96   97                                                  
CONECT   94   93   95  104                                                  
CONECT   95   90   94                                                       
CONECT   96   93  101                                                       
CONECT   97   93                                                            
CONECT   98   88                                                            
CONECT   99  100  102  103                                                  
CONECT  100   99  101  110                                                  
CONECT  101   96  100                                                       
CONECT  102   99  107                                                       
CONECT  103   99                                                            
CONECT  104   94                                                            
CONECT  105  106  108  109                                                  
CONECT  106  105  107  116                                                  
CONECT  107  102  106                                                       
CONECT  108  105  113                                                       
CONECT  109  105                                                            
CONECT  110  100                                                            
CONECT  111  112  114  115                                                  
CONECT  112  111  113  122                                                  
CONECT  113  108  112                                                       
CONECT  114  111  119                                                       
CONECT  115  111                                                            
CONECT  116  106                                                            
CONECT  117  118  120  121                                                  
CONECT  118  117  119  128                                                  
CONECT  119  114  118                                                       
CONECT  120  117  125                                                       
CONECT  121  117                                                            
CONECT  122  112                                                            
CONECT  123  124  126  127                                                  
CONECT  124  123  125                                                       
CONECT  125  120  124                                                       
CONECT  126  123                                                            
CONECT  127  123                                                            
CONECT  128  118                                                            
MASTER        0    0    0    0    0    0    0    0  128    0  254    0
END

Synonyms

Value	Source
Eicosaprenyl diphosphate	ChEBI
Eicosaprenyl diphosphoric acid	Generator
Icosaprenyl diphosphoric acid	Generator

Molecular Formula

C₁₀₀H₁₆₄O₇P₂

Average Mass

1540.3155

Monoisotopic Mass

1539.195230626

IUPAC Name

({hydroxy[(3,7,11,15,19,23,27,31,35,39,43,47,51,55,59,63,67,71,75,79-icosamethyloctaconta-2,6,10,14,18,22,26,30,34,38,42,46,50,54,58,62,66,70,74,78-icosaen-1-yl)oxy]phosphoryl}oxy)phosphonic acid

Traditional Name

eicosaprenyl diphosphate

CAS Registry Number

Not Available

SMILES

[H]C(CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])CCC(C)=C([H])COP(O)(=O)OP(O)(O)=O)=C(C)CCC=C(C)C

InChI Identifier

InChI=1S/C100H164O7P2/c1-81(2)41-22-42-82(3)43-23-44-83(4)45-24-46-84(5)47-25-48-85(6)49-26-50-86(7)51-27-52-87(8)53-28-54-88(9)55-29-56-89(10)57-30-58-90(11)59-31-60-91(12)61-32-62-92(13)63-33-64-93(14)65-34-66-94(15)67-35-68-95(16)69-36-70-96(17)71-37-72-97(18)73-38-74-98(19)75-39-76-99(20)77-40-78-100(21)79-80-106-109(104,105)107-108(101,102)103/h41,43,45,47,49,51,53,55,57,59,61,63,65,67,69,71,73,75,77,79H,22-40,42,44,46,48,50,52,54,56,58,60,62,64,66,68,70,72,74,76,78,80H2,1-21H3,(H,104,105)(H2,101,102,103)

InChI Key

KDALOUQNOWKDTH-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as bactoprenol diphosphates. These are polyprenyl compounds consisting of a diphosphate group substituted by a bactoprenyl moiety.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Polyprenols

Direct Parent

Bactoprenol diphosphates

Alternative Parents

Substituents

Polyterpenoid
Bactoprenol diphosphate
Polyprenyl diphosphate
Polyprenyl monophosphate
Organic pyrophosphate
Isoprenoid phosphate
Monoalkyl phosphate
Alkyl phosphate
Phosphoric acid ester
Organic phosphoric acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

polyprenol diphosphate (CHEBI:53033 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.00049 g/L	ALOGPS
logP	9.71	ALOGPS
logP	31.83	ChemAxon
logS	-6.5	ALOGPS
pKa (Strongest Acidic)	1.77	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	113.29 Å²	ChemAxon
Rotatable Bond Count	62	ChemAxon
Refractivity	501.37 m³·mol⁻¹	ChemAxon
Polarizability	201.52 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-000i-0400090000-72be3bb9f2ef00f1faff	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-056r-7900010000-6a1432cc12cbf56d579c	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-004i-9000000000-8630c6430b5448e14099	2016-09-12	View Spectrum

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (eluted)	2025-10-24	799.8
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-24	157.4
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (eluted)	2025-10-24	2992.4
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-24	3137.0
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-24	3306.1
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (eluted)	2025-10-24	1419.8
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-24	11937.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (void)	2025-10-24	226.8
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-24	466.8
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-24	3194.6
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-24	1885.5
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-24	657.3
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-24	878.1
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-24	17.2
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-24	283.1
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-24	548.2
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (retained)	2025-10-24	1206.7
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-24	2649.5
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-24	7209.4

Retention Indices

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces; Human saliva	Unknown

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

74956398

PDB ID

Not Available

ChEBI ID

53033

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Sato M, Sato K, Nishikawa S, Hirata A, Kato J, Nakano A: The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis. Mol Cell Biol. 1999 Jan;19(1):471-83. doi: 10.1128/MCB.19.1.471. [PubMed:9858571 ]
Grabinska K, Palamarczyk G: Dolichol biosynthesis in the yeast Saccharomyces cerevisiae: an insight into the regulatory role of farnesyl diphosphate synthase. FEMS Yeast Res. 2002 Aug;2(3):259-65. doi: 10.1016/S1567-1356(02)00110-1. [PubMed:12702274 ]
Herrgard MJ, Swainston N, Dobson P, Dunn WB, Arga KY, Arvas M, Bluthgen N, Borger S, Costenoble R, Heinemann M, Hucka M, Le Novere N, Li P, Liebermeister W, Mo ML, Oliveira AP, Petranovic D, Pettifer S, Simeonidis E, Smallbone K, Spasic I, Weichart D, Brent R, Broomhead DS, Westerhoff HV, Kirdar B, Penttila M, Klipp E, Palsson BO, Sauer U, Oliver SG, Mendes P, Nielsen J, Kell DB: A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. Nat Biotechnol. 2008 Oct;26(10):1155-60. doi: 10.1038/nbt1492. [PubMed:18846089 ]

Showing metabocard for icosaprenyl diphosphate (MMDBc0033079)

MOL for #<Metabolite:0x000056432029bf08>

3D MOL for #<Metabolite:0x000056432029bf08>

3D SDF for #<Metabolite:0x000056432029bf08>

3D-SDF for #<Metabolite:0x000056432029bf08>

PDB for #<Metabolite:0x000056432029bf08>

3D PDB for #<Metabolite:0x000056432029bf08>

SMILES for #<Metabolite:0x000056432029bf08>

INCHI for #<Metabolite:0x000056432029bf08>

Structure for #<Metabolite:0x000056432029bf08>

3D Structure for #<Metabolite:0x000056432029bf08>