MiMeDB: Showing metabocard for 6-deoxy-6-sulfo-D-glucono-1,5-lactone (MMDBc0055599)

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2022-06-17 19:59:56 UTC

Update Date

2025-10-07 16:09:13 UTC

Metabolite ID

MMDBc0055599

Metabolite Identification

Common Name

6-deoxy-6-sulfo-D-glucono-1,5-lactone

Description

6-deoxy-6-sulfo-D-glucono-1,5-lactone is a sulfonated carbohydrate compound classified within the class of lactones. Its chemical structure features a gluconolactone backbone with a sulfonic acid group at the 6-position, which imparts unique properties and reactivity. This compound is involved in various biochemical pathways, particularly in the metabolism of carbohydrates and sulfated polysaccharides. It has been identified as a metabolite in studies examining metabolic changes under different physiological conditions, highlighting its potential role in cellular processes. For instance, increased levels of 6-deoxy-6-sulfo-D-glucono-1,5-lactone have been reported alongside other metabolites, suggesting its involvement in complex metabolic networks (PMID:38448814 ). The presence of this lactone in metabolic studies may provide insights into sulfation processes and their implications in cellular signaling and function.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652306172221592D          

 19 19  0  0  1  0            999 V2000
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.8875    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    2.9684    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3184    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    1.6500    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    1.6500    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    0.4125    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    0.4125    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  3  2  1  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  3  7  1  6  0  0  0
  4  8  1  6  0  0  0
  5  9  1  6  0  0  0
 10  6  2  0  0  0  0
 14  2  1  0  0  0  0
 14  6  1  0  0  0  0
 15  1  1  0  0  0  0
 15 11  1  0  0  0  0
 15 12  2  0  0  0  0
 15 13  2  0  0  0  0
  2 16  1  6  0  0  0
  3 17  1  1  0  0  0
  4 18  1  6  0  0  0
  5 19  1  1  0  0  0
M  CHG  1  11  -1
M  END
> <DATABASE_ID>
MMDBc0055599

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@]1(O)C(=O)O[C@]([H])(CS([O-])(=O)=O)[C@@]([H])(O)[C@]1([H])O

> <INCHI_IDENTIFIER>
InChI=1S/C6H10O8S/c7-3-2(1-15(11,12)13)14-6(10)5(9)4(3)8/h2-5,7-9H,1H2,(H,11,12,13)/p-1/t2-,3-,4+,5-/m1/s1

> <INCHI_KEY>
YOMAOVCVRGQULE-SQOUGZDYSA-M

> <FORMULA>
C6H9O8S

> <MOLECULAR_WEIGHT>
241.19

> <EXACT_MASS>
241.002362004

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
24

> <JCHEM_AVERAGE_POLARIZABILITY>
19.363013662290808

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
-1

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[(2S,3S,4S,5R)-3,4,5-trihydroxy-6-oxooxan-2-yl]methanesulfonate

> <JCHEM_LOGP>
-3.034880468666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
11.621712058345267

> <JCHEM_PKA_STRONGEST_ACIDIC>
-1.4020664407646501

> <JCHEM_PKA_STRONGEST_BASIC>
-3.650934706724297

> <JCHEM_POLAR_SURFACE_AREA>
144.19

> <JCHEM_REFRACTIVITY>
42.051100000000005

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
[(2S,3S,4S,5R)-3,4,5-trihydroxy-6-oxooxan-2-yl]methanesulfonate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-JUN-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-JUN-22         0                                  
HETATM    1  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       1.334   3.850   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0      -1.334   2.310   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0       4.001   5.390   0.000  0.00  0.00           O-1
HETATM   12  O   UNK     0       5.541   3.850   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       2.461   3.850   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0       2.667  -0.000   0.000  0.00  0.00           O+0
HETATM   15  S   UNK     0       4.001   3.850   0.000  0.00  0.00           S+0
HETATM   16  H   UNK     0       2.667   3.080   0.000  0.00  0.00           H+0
HETATM   17  H   UNK     0       0.000   3.080   0.000  0.00  0.00           H+0
HETATM   18  H   UNK     0       1.334   0.770   0.000  0.00  0.00           H+0
HETATM   19  H   UNK     0      -1.334   0.770   0.000  0.00  0.00           H+0
CONECT    1    2   15                                                       
CONECT    2    1    3   14   16                                             
CONECT    3    2    4    7   17                                             
CONECT    4    3    5    8   18                                             
CONECT    5    4    6    9   19                                             
CONECT    6    5   10   14                                                  
CONECT    7    3                                                            
CONECT    8    4                                                            
CONECT    9    5                                                            
CONECT   10    6                                                            
CONECT   11   15                                                            
CONECT   12   15                                                            
CONECT   13   15                                                            
CONECT   14    2    6                                                       
CONECT   15    1   11   12   13                                             
CONECT   16    2                                                            
CONECT   17    3                                                            
CONECT   18    4                                                            
CONECT   19    5                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   38    0
END

Synonyms

Value	Source
[(2S,3S,4S,5R)-3,4,5-Trihydroxy-6-oxooxan-2-yl]methanesulfonate	ChEBI
[(2S,3S,4S,5R)-3,4,5-Trihydroxy-6-oxooxan-2-yl]methanesulfonic acid	Generator
[(2S,3S,4S,5R)-3,4,5-Trihydroxy-6-oxooxan-2-yl]methanesulphonate	Generator
[(2S,3S,4S,5R)-3,4,5-Trihydroxy-6-oxooxan-2-yl]methanesulphonic acid	Generator
6-Deoxy-6-sulphO-D-glucono-1,5-lactone	Generator

Molecular Formula

C₆H₉O₈S

Average Mass

241.19

Monoisotopic Mass

241.002362004

IUPAC Name

[(2S,3S,4S,5R)-3,4,5-trihydroxy-6-oxooxan-2-yl]methanesulfonate

Traditional Name

[(2S,3S,4S,5R)-3,4,5-trihydroxy-6-oxooxan-2-yl]methanesulfonate

CAS Registry Number

Not Available

SMILES

[H][C@]1(O)C(=O)O[C@]([H])(CS([O-])(=O)=O)[C@@]([H])(O)[C@]1([H])O

InChI Identifier

InChI=1S/C6H10O8S/c7-3-2(1-15(11,12)13)14-6(10)5(9)4(3)8/h2-5,7-9H,1H2,(H,11,12,13)/p-1/t2-,3-,4+,5-/m1/s1

InChI Key

YOMAOVCVRGQULE-SQOUGZDYSA-M

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as gluconolactones. These are polyhydroxy acids containing a gluconolactone molecule, which is characterized by a tetrahydropyran substituted by three hydroxyl groups, one ketone group, and one hydroxymethyl group.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Gluconolactones

Alternative Parents

Substituents

Gluconolactone
Delta valerolactone
Delta_valerolactone
Oxane
Organic sulfonic acid or derivatives
Organosulfonic acid or derivatives
Organosulfonic acid
Sulfonyl
Alkanesulfonic acid
Secondary alcohol
Lactone
Carboxylic acid ester
Polyol
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Oxacycle
Carboxylic acid derivative
Alcohol
Organosulfur compound
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organic anion
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
logP	-3	ChemAxon
pKa (Strongest Acidic)	-1.4	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	144.19 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	42.05 m³·mol⁻¹	ChemAxon
Polarizability	19.36 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (eluted)	2025-10-24	487.4
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-24	281.4
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (void)	2025-10-24	46.3
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-24	249.2
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-24	291.8
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (void)	2025-10-24	331.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (void)	2025-10-24	840.8
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-24	848.1
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-24	1001.2
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-24	174.1
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-24	326.3
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-24	188.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-24	34.6
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-24	415.3
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-24	700.9
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (void)	2025-10-24	74.4
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-24	286.1
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-24	933.0
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-24	644.6

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	6-deoxy-6-sulfo-D-glucono-1,5-lactone_TMS_1	C[Si](C)(C)O[C@H]1C(=O)O[C@H](CS(=O)(=O)[O-])[C@@H](O)[C@@H]1O	standard non polar	2025-10-24	1897.01
Gas Chromatography	6-deoxy-6-sulfo-D-glucono-1,5-lactone_TMS_2	C[Si](C)(C)O[C@@H]1[C@@H](CS(=O)(=O)[O-])OC(=O)[C@H](O)[C@H]1O	standard non polar	2025-10-24	1379.84
Gas Chromatography	6-deoxy-6-sulfo-D-glucono-1,5-lactone_TMS_3	C[Si](C)(C)O[C@@H]1[C@@H](O)C(=O)O[C@H](CS(=O)(=O)[O-])[C@H]1O	standard non polar	2025-10-24	2207.93
Gas Chromatography	6-deoxy-6-sulfo-D-glucono-1,5-lactone_TMS_4	C[Si](C)(C)O[C@@H]1[C@@H](CS(=O)(=O)[O-])OC(=O)[C@H](O[Si](C)(C)C)[C@H]1O	standard non polar	2025-10-24	2317.62
Gas Chromatography	6-deoxy-6-sulfo-D-glucono-1,5-lactone_TMS_5	C[Si](C)(C)O[C@@H]1[C@@H](O[Si](C)(C)C)C(=O)O[C@H](CS(=O)(=O)[O-])[C@H]1O	standard non polar	2025-10-24	2053.29
Gas Chromatography	6-deoxy-6-sulfo-D-glucono-1,5-lactone_TMS_6	C[Si](C)(C)O[C@@H]1[C@@H](CS(=O)(=O)[O-])OC(=O)[C@H](O)[C@H]1O[Si](C)(C)C	standard non polar	2025-10-24	1494.39
Gas Chromatography	6-deoxy-6-sulfo-D-glucono-1,5-lactone_TMS_7	C[Si](C)(C)O[C@@H]1[C@@H](O[Si](C)(C)C)C(=O)O[C@H](CS(=O)(=O)[O-])[C@H]1O[Si](C)(C)C	standard non polar	2025-10-24	1926.01
Gas Chromatography	6-deoxy-6-sulfo-D-glucono-1,5-lactone_TMS_1	C[Si](C)(C)O[C@H]1C(=O)O[C@H](CS(=O)(=O)[O-])[C@@H](O)[C@@H]1O	standard polar	2025-10-24	2615.42
Gas Chromatography	6-deoxy-6-sulfo-D-glucono-1,5-lactone_TMS_2	C[Si](C)(C)O[C@@H]1[C@@H](CS(=O)(=O)[O-])OC(=O)[C@H](O)[C@H]1O	standard polar	2025-10-24	2257.33
Gas Chromatography	6-deoxy-6-sulfo-D-glucono-1,5-lactone_TMS_3	C[Si](C)(C)O[C@@H]1[C@@H](O)C(=O)O[C@H](CS(=O)(=O)[O-])[C@H]1O	standard polar	2025-10-24	2285.64
Gas Chromatography	6-deoxy-6-sulfo-D-glucono-1,5-lactone_TMS_4	C[Si](C)(C)O[C@@H]1[C@@H](CS(=O)(=O)[O-])OC(=O)[C@H](O[Si](C)(C)C)[C@H]1O	standard polar	2025-10-24	2469.65
Gas Chromatography	6-deoxy-6-sulfo-D-glucono-1,5-lactone_TMS_5	C[Si](C)(C)O[C@@H]1[C@@H](O[Si](C)(C)C)C(=O)O[C@H](CS(=O)(=O)[O-])[C@H]1O	standard polar	2025-10-24	1625.2
Gas Chromatography	6-deoxy-6-sulfo-D-glucono-1,5-lactone_TMS_6	C[Si](C)(C)O[C@@H]1[C@@H](CS(=O)(=O)[O-])OC(=O)[C@H](O)[C@H]1O[Si](C)(C)C	standard polar	2025-10-24	1340.83
Gas Chromatography	6-deoxy-6-sulfo-D-glucono-1,5-lactone_TMS_7	C[Si](C)(C)O[C@@H]1[C@@H](O[Si](C)(C)C)C(=O)O[C@H](CS(=O)(=O)[O-])[C@H]1O[Si](C)(C)C	standard polar	2025-10-24	2080.55

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Proteobacteria	1	Human

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

58145689

KEGG Compound ID

Not Available

BioCyc ID

CPD-18481

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

92136129

PDB ID

Not Available

ChEBI ID

88091

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Bansal P, Morgat A, Axelsen KB, Muthukrishnan V, Coudert E, Aimo L, Hyka-Nouspikel N, Gasteiger E, Kerhornou A, Neto TB, Pozzato M, Blatter MC, Ignatchenko A, Redaschi N, Bridge A: Rhea, the reaction knowledgebase in 2022. Nucleic Acids Res. 2022 Jan 7;50(D1):D693-D700. doi: 10.1093/nar/gkab1016. [PubMed:34755880 ]

Showing metabocard for 6-deoxy-6-sulfo-D-glucono-1,5-lactone (MMDBc0055599)

MOL for #<Metabolite:0x00007fc9369951e0>

3D MOL for #<Metabolite:0x00007fc9369951e0>

3D SDF for #<Metabolite:0x00007fc9369951e0>

3D-SDF for #<Metabolite:0x00007fc9369951e0>

PDB for #<Metabolite:0x00007fc9369951e0>

3D PDB for #<Metabolite:0x00007fc9369951e0>

SMILES for #<Metabolite:0x00007fc9369951e0>

INCHI for #<Metabolite:0x00007fc9369951e0>

Structure for #<Metabolite:0x00007fc9369951e0>

3D Structure for #<Metabolite:0x00007fc9369951e0>