Showing metabocard for CDP-DG(18:2(9Z,12Z)/18:2(9Z,12Z)) (MMDBc0056431)
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Version | 1.0 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Status | Detected and Quantified | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Creation Date | 2022-07-07 21:27:16 UTC | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Update Date | 2024-04-30 20:56:15 UTC | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Metabolite ID | MMDBc0056431 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Metabolite Identification | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Common Name | CDP-DG(18:2(9Z,12Z)/18:2(9Z,12Z)) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Description | CDP-DG(18:2(9Z,12Z)/18:2(9Z,12Z)) is a cytidine diphosphate diacylglycerol or CDP-diacylglycerol. It is a glycerophospholipid in which a cytidine diphosphate moiety occupies a glycerol substitution site. As is the case with diacylglycerols, CDP-diacylglycerols can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. CDP-DG(18:2(9Z,12Z)/18:2(9Z,12Z)), in particular, consists of one 9Z,12Z-octadecadienoyl chain at the C-1 position and one 9Z,12Z-octadecadienoyl chain at the C-2 position. In E. coli glycerophospholipid metabolism, the biosynthesis of CDP-diacylglycerol (CDP-DG) involves condensation of phosphatidic acid (PA) and cytidine triphosphate, with elimination of pyrophosphate, catalysed by the enzyme CDP-diacylglycerol synthase. The resulting CDP-diacylglycerol can be utilized immediately for the synthesis of phosphatidylglycerol (PG), and thence cardiolipin (CL), and of phosphatidylinositol (PI). CDP-DG(18:2(9Z,12Z)/18:2(9Z,12Z)) is also a substrate of CDP-diacylglycerol pyrophosphatase. It is involved in CDP-diacylglycerol degradation pathway. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Structure | MOL for #<Metabolite:0x00007f536308d050>CDP-DG(18:2(9Z,12Z)/18:2(9Z,12Z)) Mrv1652303302022362D 69 70 0 0 1 0 999 V2000 17.4451 -4.0157 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 16.4838 -4.5706 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 15.5226 -4.0157 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 18.4061 -4.5706 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 14.5612 -4.5706 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 15.7337 -5.6806 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 17.3206 -5.7230 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0 19.4768 -4.2072 0.0000 P 0 0 0 0 0 0 0 0 0 0 0 0 19.4768 -5.3368 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 20.8027 -4.5411 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 19.4768 -3.1857 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 21.8732 -4.1777 0.0000 P 0 0 0 0 0 0 0 0 0 0 0 0 21.8732 -5.3072 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 23.1992 -4.5116 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 21.8732 -3.1563 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 25.1589 -6.7486 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0 26.8306 -6.7486 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 27.7371 -5.8702 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 26.0550 -5.2081 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 24.1058 -5.8608 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0 26.8357 -7.5484 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 25.1528 -7.5601 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 24.1017 -5.0357 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 28.4120 -3.3822 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 28.4120 -4.2072 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 27.6975 -2.9697 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 27.6975 -4.6197 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 26.9830 -3.3822 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 26.9830 -4.2072 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 27.6976 -2.1447 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 29.1119 -4.5018 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 13.8468 -4.1581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 13.8468 -3.3867 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 13.1327 -4.5712 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 12.4185 -4.1581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 11.7044 -4.5712 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 10.9903 -4.1581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 10.2762 -4.5712 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 9.5620 -4.1581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 8.8479 -4.5712 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 8.1337 -4.1581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 7.3087 -4.1581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 6.5946 -4.5712 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 5.8804 -4.1581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 5.0554 -4.1581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.3413 -4.5712 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 3.6271 -4.1581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.9130 -4.5712 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.1988 -4.1581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.4847 -4.5712 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 15.0193 -6.0931 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 15.0193 -6.8646 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 14.3052 -5.6800 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 13.5910 -6.0931 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 12.8769 -5.6800 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 12.1627 -6.0931 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 11.4486 -5.6800 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 10.7344 -6.0931 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 10.0203 -5.6800 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 9.3062 -6.0931 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 8.4812 -6.0931 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 7.7670 -5.6800 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 7.0529 -6.0931 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 6.2278 -6.0931 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 5.5137 -5.6800 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.7996 -6.0931 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.0854 -5.6800 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 3.3713 -6.0931 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.6572 -5.6800 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 0 2 6 1 0 0 0 0 2 7 1 1 0 0 0 3 2 1 0 0 0 0 4 1 1 0 0 0 0 5 3 1 0 0 0 0 8 4 1 0 0 0 0 8 9 1 0 0 0 0 8 10 1 0 0 0 0 8 11 2 0 0 0 0 12 10 1 0 0 0 0 12 13 1 0 0 0 0 12 14 1 0 0 0 0 12 15 2 0 0 0 0 14 23 1 0 0 0 0 16 17 1 0 0 0 0 16 22 1 1 0 0 0 18 19 1 0 0 0 0 18 17 1 0 0 0 0 18 27 1 1 0 0 0 19 20 1 0 0 0 0 20 16 1 0 0 0 0 20 23 1 1 0 0 0 21 17 1 0 0 0 0 24 25 1 0 0 0 0 24 26 2 0 0 0 0 25 27 1 0 0 0 0 25 31 2 0 0 0 0 26 28 1 0 0 0 0 26 30 1 0 0 0 0 27 29 1 0 0 0 0 28 29 2 0 0 0 0 32 5 1 0 0 0 0 32 33 2 0 0 0 0 32 34 1 0 0 0 0 34 35 1 0 0 0 0 35 36 1 0 0 0 0 36 37 1 0 0 0 0 37 38 1 0 0 0 0 38 39 1 0 0 0 0 39 40 1 0 0 0 0 40 41 1 0 0 0 0 41 42 2 0 0 0 0 42 43 1 0 0 0 0 43 44 1 0 0 0 0 44 45 2 0 0 0 0 45 46 1 0 0 0 0 46 47 1 0 0 0 0 47 48 1 0 0 0 0 48 49 1 0 0 0 0 49 50 1 0 0 0 0 51 6 1 0 0 0 0 51 52 2 0 0 0 0 51 53 1 0 0 0 0 53 54 1 0 0 0 0 54 55 1 0 0 0 0 55 56 1 0 0 0 0 56 57 1 0 0 0 0 57 58 1 0 0 0 0 58 59 1 0 0 0 0 59 60 1 0 0 0 0 60 61 2 0 0 0 0 61 62 1 0 0 0 0 62 63 1 0 0 0 0 63 64 2 0 0 0 0 64 65 1 0 0 0 0 65 66 1 0 0 0 0 66 67 1 0 0 0 0 67 68 1 0 0 0 0 68 69 1 0 0 0 0 M END 3D MOL for #<Metabolite:0x00007f536308d050>HMDB0115969 RDKit 3D CDP-DG(18:2(9Z,12Z)/18:2(9Z,12Z)) 149150 0 0 0 0 0 0 0 0999 V2000 6.0587 -6.9147 -4.3199 C 0 0 0 0 0 0 0 0 0 0 0 0 6.1377 -5.9768 -5.4822 C 0 0 0 0 0 0 0 0 0 0 0 0 4.8594 -5.2062 -5.6520 C 0 0 0 0 0 0 0 0 0 0 0 0 4.9574 -4.2602 -6.8341 C 0 0 0 0 0 0 0 0 0 0 0 0 3.6289 -3.5021 -6.9678 C 0 0 0 0 0 0 0 0 0 0 0 0 3.6238 -2.5571 -8.0782 C 0 0 0 0 0 0 0 0 0 0 0 0 3.4407 -1.2647 -8.0536 C 0 0 0 0 0 0 0 0 0 0 0 0 3.1980 -0.5347 -6.8077 C 0 0 0 0 0 0 0 0 0 0 0 0 4.2309 0.4919 -6.5584 C 0 0 0 0 0 0 0 0 0 0 0 0 5.0462 0.5683 -5.5383 C 0 0 0 0 0 0 0 0 0 0 0 0 5.0539 -0.3983 -4.4489 C 0 0 0 0 0 0 0 0 0 0 0 0 4.7332 0.2168 -3.1062 C 0 0 0 0 0 0 0 0 0 0 0 0 4.7819 -0.8078 -2.0036 C 0 0 0 0 0 0 0 0 0 0 0 0 4.4308 -0.2066 -0.6685 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5237 -1.2325 0.4501 C 0 0 0 0 0 0 0 0 0 0 0 0 4.1394 -0.6497 1.7684 C 0 0 0 0 0 0 0 0 0 0 0 0 2.7161 -0.1781 1.8752 C 0 0 0 0 0 0 0 0 0 0 0 0 1.7763 -1.2828 1.7422 C 0 0 0 0 0 0 0 0 0 0 0 0 2.2436 -2.4588 1.5736 O 0 0 0 0 0 0 0 0 0 0 0 0 0.3883 -1.1797 1.7885 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.3619 -2.3553 1.6712 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.8355 -2.2435 1.7547 C 0 0 2 0 0 0 0 0 0 0 0 0 -2.3607 -3.5978 2.2087 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.6301 -3.4527 2.7507 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.2702 -4.8988 3.2764 P 0 0 0 0 0 5 0 0 0 0 0 0 -3.8484 -6.0723 2.4360 O 0 0 0 0 0 0 0 0 0 0 0 0 -5.9768 -4.7836 3.1312 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.9317 -5.2159 4.8935 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.3921 -3.9515 5.8978 P 0 0 0 0 0 5 0 0 0 0 0 0 -5.8257 -3.5353 5.6089 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.3675 -4.4654 7.5202 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.3318 -2.6627 5.6436 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.4737 -2.4771 6.7195 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.5324 -1.3191 6.4619 C 0 0 1 0 0 0 0 0 0 0 0 0 -2.2479 -0.1255 6.2629 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.1867 0.8074 6.2490 C 0 0 1 0 0 0 0 0 0 0 0 0 -1.6865 2.1608 6.1396 N 0 0 0 0 0 0 0 0 0 0 0 0 -0.9271 3.0954 5.5438 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.3546 4.4122 5.4119 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.5935 4.7672 5.9077 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.0617 6.1176 5.7922 N 0 0 0 0 0 0 0 0 0 0 0 0 -3.3349 3.8079 6.5007 N 0 0 0 0 0 0 0 0 0 0 0 0 -2.8846 2.5427 6.6089 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.5652 1.6242 7.1636 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.5278 0.5229 7.5632 C 0 0 0 0 0 0 0 0 0 0 0 0 0.8068 0.8475 7.4495 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.6931 -0.9950 7.6623 C 0 0 1 0 0 0 0 0 0 0 0 0 -1.3298 -1.3333 8.8599 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.5815 -1.6264 0.8068 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.2866 -0.4697 0.9397 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.1979 0.1186 2.0489 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.1579 0.1602 -0.0856 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.6102 1.5431 0.3503 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.6378 2.0308 -0.6351 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.1937 3.3791 -0.4129 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.4193 4.5907 -0.7570 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.0410 4.6159 -0.2678 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.2920 5.9340 -0.5329 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.3695 6.4280 -1.8731 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.4333 6.5380 -2.7455 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.0439 6.1847 -2.6523 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.4659 5.5198 -1.5149 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.0066 4.2524 -1.7374 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.0680 3.5670 -3.0268 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.9072 2.3494 -3.1219 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.6099 1.1734 -2.3123 C 0 0 0 0 0 0 0 0 0 0 0 0 0.7206 0.5103 -2.5044 C 0 0 0 0 0 0 0 0 0 0 0 0 0.7030 -0.6985 -1.5529 C 0 0 0 0 0 0 0 0 0 0 0 0 5.3020 -7.6848 -4.4645 H 0 0 0 0 0 0 0 0 0 0 0 0 7.0635 -7.4246 -4.2471 H 0 0 0 0 0 0 0 0 0 0 0 0 5.9060 -6.4175 -3.3475 H 0 0 0 0 0 0 0 0 0 0 0 0 6.2811 -6.6053 -6.4001 H 0 0 0 0 0 0 0 0 0 0 0 0 7.0293 -5.3265 -5.3950 H 0 0 0 0 0 0 0 0 0 0 0 0 4.0551 -5.9471 -5.9063 H 0 0 0 0 0 0 0 0 0 0 0 0 4.5415 -4.6897 -4.7354 H 0 0 0 0 0 0 0 0 0 0 0 0 5.1786 -4.8029 -7.7651 H 0 0 0 0 0 0 0 0 0 0 0 0 5.7637 -3.5248 -6.6632 H 0 0 0 0 0 0 0 0 0 0 0 0 2.8141 -4.2756 -7.0681 H 0 0 0 0 0 0 0 0 0 0 0 0 3.4652 -3.0306 -6.0042 H 0 0 0 0 0 0 0 0 0 0 0 0 3.8026 -2.9983 -9.0926 H 0 0 0 0 0 0 0 0 0 0 0 0 3.4647 -0.6810 -8.9786 H 0 0 0 0 0 0 0 0 0 0 0 0 2.1813 -0.0044 -6.9643 H 0 0 0 0 0 0 0 0 0 0 0 0 3.0540 -1.1685 -5.9418 H 0 0 0 0 0 0 0 0 0 0 0 0 4.3277 1.3005 -7.3343 H 0 0 0 0 0 0 0 0 0 0 0 0 5.7601 1.4203 -5.5246 H 0 0 0 0 0 0 0 0 0 0 0 0 4.3688 -1.2255 -4.6296 H 0 0 0 0 0 0 0 0 0 0 0 0 6.0636 -0.8796 -4.3152 H 0 0 0 0 0 0 0 0 0 0 0 0 5.4525 1.0330 -2.9550 H 0 0 0 0 0 0 0 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H 0 0 0 0 0 0 0 0 0 0 0 0 -0.5075 0.5184 5.4442 H 0 0 0 0 0 0 0 0 0 0 0 0 0.0491 2.8139 5.1515 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.7637 5.1809 4.9382 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.0542 6.7313 6.6260 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.4183 6.5260 4.9028 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.0183 1.0132 8.4334 H 0 0 0 0 0 0 0 0 0 0 0 0 1.2973 0.0490 7.1300 H 0 0 0 0 0 0 0 0 0 0 0 0 0.2923 -1.4958 7.5508 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.6723 -1.7353 9.4882 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.0929 -0.4214 -0.2324 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.6835 0.2679 -1.0715 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.1856 1.3359 1.3208 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.7903 2.1826 0.5984 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.2145 2.0019 -1.6922 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.4784 1.2784 -0.7046 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.5289 3.5267 0.6635 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.1801 3.4558 -0.9717 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.4720 4.7892 -1.8921 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.9780 5.4748 -0.2975 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.0367 4.4066 0.8175 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.3958 3.8596 -0.8016 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.3657 5.9744 0.0226 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.9547 6.6724 0.0903 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.4023 6.7780 -2.2371 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.7328 6.9838 -3.7649 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.6630 5.7969 -3.6298 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.4838 7.2357 -2.6657 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.3143 5.9353 -0.5135 H 0 0 0 0 0 0 0 0 0 0 0 0 0.4264 3.7736 -0.8474 H 0 0 0 0 0 0 0 0 0 0 0 0 1.0329 3.1750 -3.1366 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.1794 4.1385 -3.9338 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.9600 2.6762 -2.8337 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.0493 2.0679 -4.2123 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.7130 1.3683 -1.2223 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.3946 0.4029 -2.5257 H 0 0 0 0 0 0 0 0 0 0 0 0 0.8858 0.0944 -3.5018 H 0 0 0 0 0 0 0 0 0 0 0 0 1.5758 1.1074 -2.2131 H 0 0 0 0 0 0 0 0 0 0 0 0 1.6851 -0.9679 -1.1867 H 0 0 0 0 0 0 0 0 0 0 0 0 0.0128 -0.4851 -0.7387 H 0 0 0 0 0 0 0 0 0 0 0 0 0.3282 -1.5948 -2.1276 H 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 1 0 4 5 1 0 5 6 1 0 6 7 2 0 7 8 1 0 8 9 1 0 9 10 2 0 10 11 1 0 11 12 1 0 12 13 1 0 13 14 1 0 14 15 1 0 15 16 1 0 16 17 1 0 17 18 1 0 18 19 2 0 18 20 1 0 20 21 1 0 21 22 1 0 22 23 1 0 23 24 1 0 24 25 1 0 25 26 2 0 25 27 1 0 25 28 1 0 28 29 1 0 29 30 2 0 29 31 1 0 29 32 1 0 32 33 1 0 33 34 1 0 34 35 1 0 35 36 1 0 36 37 1 0 37 38 1 0 38 39 2 0 39 40 1 0 40 41 1 0 40 42 2 0 42 43 1 0 43 44 2 0 36 45 1 0 45 46 1 0 45 47 1 0 47 48 1 0 22 49 1 0 49 50 1 0 50 51 2 0 50 52 1 0 52 53 1 0 53 54 1 0 54 55 1 0 55 56 1 0 56 57 1 0 57 58 1 0 58 59 1 0 59 60 2 0 60 61 1 0 61 62 1 0 62 63 2 0 63 64 1 0 64 65 1 0 65 66 1 0 66 67 1 0 67 68 1 0 47 34 1 0 43 37 1 0 1 69 1 0 1 70 1 0 1 71 1 0 2 72 1 0 2 73 1 0 3 74 1 0 3 75 1 0 4 76 1 0 4 77 1 0 5 78 1 0 5 79 1 0 6 80 1 0 7 81 1 0 8 82 1 0 8 83 1 0 9 84 1 0 10 85 1 0 11 86 1 0 11 87 1 0 12 88 1 0 12 89 1 0 13 90 1 0 13 91 1 0 14 92 1 0 14 93 1 0 15 94 1 0 15 95 1 0 16 96 1 0 16 97 1 0 17 98 1 0 17 99 1 0 21100 1 0 21101 1 0 22102 1 1 23103 1 0 23104 1 0 27105 1 0 31106 1 0 33107 1 0 33108 1 0 34109 1 6 36110 1 6 38111 1 0 39112 1 0 41113 1 0 41114 1 0 45115 1 0 46116 1 0 47117 1 6 48118 1 0 52119 1 0 52120 1 0 53121 1 0 53122 1 0 54123 1 0 54124 1 0 55125 1 0 55126 1 0 56127 1 0 56128 1 0 57129 1 0 57130 1 0 58131 1 0 58132 1 0 59133 1 0 60134 1 0 61135 1 0 61136 1 0 62137 1 0 63138 1 0 64139 1 0 64140 1 0 65141 1 0 65142 1 0 66143 1 0 66144 1 0 67145 1 0 67146 1 0 68147 1 0 68148 1 0 68149 1 0 M END 3D SDF for #<Metabolite:0x00007f536308d050>CDP-DG(18:2(9Z,12Z)/18:2(9Z,12Z)) Mrv1652303302022362D 69 70 0 0 1 0 999 V2000 17.4451 -4.0157 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 16.4838 -4.5706 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 15.5226 -4.0157 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 18.4061 -4.5706 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 14.5612 -4.5706 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 15.7337 -5.6806 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 17.3206 -5.7230 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0 19.4768 -4.2072 0.0000 P 0 0 0 0 0 0 0 0 0 0 0 0 19.4768 -5.3368 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 20.8027 -4.5411 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 19.4768 -3.1857 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 21.8732 -4.1777 0.0000 P 0 0 0 0 0 0 0 0 0 0 0 0 21.8732 -5.3072 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 23.1992 -4.5116 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 21.8732 -3.1563 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 25.1589 -6.7486 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0 26.8306 -6.7486 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 27.7371 -5.8702 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 26.0550 -5.2081 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 24.1058 -5.8608 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0 26.8357 -7.5484 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 25.1528 -7.5601 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 24.1017 -5.0357 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 28.4120 -3.3822 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 28.4120 -4.2072 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 27.6975 -2.9697 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 27.6975 -4.6197 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 26.9830 -3.3822 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 26.9830 -4.2072 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 27.6976 -2.1447 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0 29.1119 -4.5018 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 13.8468 -4.1581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 13.8468 -3.3867 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 13.1327 -4.5712 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 12.4185 -4.1581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 11.7044 -4.5712 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 10.9903 -4.1581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 10.2762 -4.5712 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 9.5620 -4.1581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 8.8479 -4.5712 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 8.1337 -4.1581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 7.3087 -4.1581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 6.5946 -4.5712 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 5.8804 -4.1581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 5.0554 -4.1581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.3413 -4.5712 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 3.6271 -4.1581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.9130 -4.5712 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.1988 -4.1581 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.4847 -4.5712 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 15.0193 -6.0931 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 15.0193 -6.8646 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 14.3052 -5.6800 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 13.5910 -6.0931 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 12.8769 -5.6800 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 12.1627 -6.0931 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 11.4486 -5.6800 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 10.7344 -6.0931 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 10.0203 -5.6800 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 9.3062 -6.0931 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 8.4812 -6.0931 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 7.7670 -5.6800 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 7.0529 -6.0931 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 6.2278 -6.0931 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 5.5137 -5.6800 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.7996 -6.0931 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 4.0854 -5.6800 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 3.3713 -6.0931 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.6572 -5.6800 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 0 0 0 0 2 6 1 0 0 0 0 2 7 1 1 0 0 0 3 2 1 0 0 0 0 4 1 1 0 0 0 0 5 3 1 0 0 0 0 8 4 1 0 0 0 0 8 9 1 0 0 0 0 8 10 1 0 0 0 0 8 11 2 0 0 0 0 12 10 1 0 0 0 0 12 13 1 0 0 0 0 12 14 1 0 0 0 0 12 15 2 0 0 0 0 14 23 1 0 0 0 0 16 17 1 0 0 0 0 16 22 1 1 0 0 0 18 19 1 0 0 0 0 18 17 1 0 0 0 0 18 27 1 1 0 0 0 19 20 1 0 0 0 0 20 16 1 0 0 0 0 20 23 1 1 0 0 0 21 17 1 0 0 0 0 24 25 1 0 0 0 0 24 26 2 0 0 0 0 25 27 1 0 0 0 0 25 31 2 0 0 0 0 26 28 1 0 0 0 0 26 30 1 0 0 0 0 27 29 1 0 0 0 0 28 29 2 0 0 0 0 32 5 1 0 0 0 0 32 33 2 0 0 0 0 32 34 1 0 0 0 0 34 35 1 0 0 0 0 35 36 1 0 0 0 0 36 37 1 0 0 0 0 37 38 1 0 0 0 0 38 39 1 0 0 0 0 39 40 1 0 0 0 0 40 41 1 0 0 0 0 41 42 2 0 0 0 0 42 43 1 0 0 0 0 43 44 1 0 0 0 0 44 45 2 0 0 0 0 45 46 1 0 0 0 0 46 47 1 0 0 0 0 47 48 1 0 0 0 0 48 49 1 0 0 0 0 49 50 1 0 0 0 0 51 6 1 0 0 0 0 51 52 2 0 0 0 0 51 53 1 0 0 0 0 53 54 1 0 0 0 0 54 55 1 0 0 0 0 55 56 1 0 0 0 0 56 57 1 0 0 0 0 57 58 1 0 0 0 0 58 59 1 0 0 0 0 59 60 1 0 0 0 0 60 61 2 0 0 0 0 61 62 1 0 0 0 0 62 63 1 0 0 0 0 63 64 2 0 0 0 0 64 65 1 0 0 0 0 65 66 1 0 0 0 0 66 67 1 0 0 0 0 67 68 1 0 0 0 0 68 69 1 0 0 0 0 M END > <DATABASE_ID> MMDBc0056431 > <DATABASE_NAME> MIME > <SMILES> [H][C@@](COC(=O)CCCCCCC\C=C/C\C=C/CCCCC)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H](C(O)[C@H]1O)N1C=CC(N)=NC1=O)OC(=O)CCCCCCC\C=C/C\C=C/CCCCC > <INCHI_IDENTIFIER> InChI=1S/C48H81N3O15P2/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-43(52)61-37-40(64-44(53)34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2)38-62-67(57,58)66-68(59,60)63-39-41-45(54)46(55)47(65-41)51-36-35-42(49)50-48(51)56/h11-14,17-20,35-36,40-41,45-47,54-55H,3-10,15-16,21-34,37-39H2,1-2H3,(H,57,58)(H,59,60)(H2,49,50,56)/b13-11-,14-12-,19-17-,20-18-/t40-,41-,45+,46?,47-/m1/s1 > <INCHI_KEY> ZANLCKMSXQYNAA-DTRGFOKRSA-N > <FORMULA> C48H81N3O15P2 > <MOLECULAR_WEIGHT> 1002.13 > <EXACT_MASS> 1001.514292916 > <JCHEM_ACCEPTOR_COUNT> 12 > <JCHEM_ATOM_COUNT> 149 > <JCHEM_AVERAGE_POLARIZABILITY> 107.08687621593859 > <JCHEM_BIOAVAILABILITY> 0 > <JCHEM_DONOR_COUNT> 5 > <JCHEM_FORMAL_CHARGE> 0 > <JCHEM_GHOSE_FILTER> 0 > <JCHEM_IUPAC> {[(2R,3R,5R)-5-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}({[(2R)-2,3-bis[(9Z,12Z)-octadeca-9,12-dienoyloxy]propoxy](hydroxy)phosphoryl}oxy)phosphinic acid > <ALOGPS_LOGP> 6.77 > <JCHEM_LOGP> 9.887337812 > <ALOGPS_LOGS> -5.55 > <JCHEM_MDDR_LIKE_RULE> 0 > <JCHEM_NUMBER_OF_RINGS> 2 > <JCHEM_PHYSIOLOGICAL_CHARGE> -2 > <JCHEM_PKA> 3.2716255536258676 > <JCHEM_PKA_STRONGEST_ACIDIC> 1.8631673662376511 > <JCHEM_PKA_STRONGEST_BASIC> -0.03198989821723941 > <JCHEM_POLAR_SURFACE_AREA> 263.27 > <JCHEM_REFRACTIVITY> 263.0809 > <JCHEM_ROTATABLE_BOND_COUNT> 42 > <JCHEM_RULE_OF_FIVE> 0 > <ALOGPS_SOLUBILITY> 2.83e-03 g/l > <JCHEM_TRADITIONAL_IUPAC> [(2R,3R,5R)-5-(4-amino-2-oxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy([(2R)-2,3-bis[(9Z,12Z)-octadeca-9,12-dienoyloxy]propoxy(hydroxy)phosphoryl]oxy)phosphinic acid > <JCHEM_VEBER_RULE> 0 $$$$ 3D-SDF for #<Metabolite:0x00007f536308d050>HMDB0115969 RDKit 3D CDP-DG(18:2(9Z,12Z)/18:2(9Z,12Z)) 149150 0 0 0 0 0 0 0 0999 V2000 6.0587 -6.9147 -4.3199 C 0 0 0 0 0 0 0 0 0 0 0 0 6.1377 -5.9768 -5.4822 C 0 0 0 0 0 0 0 0 0 0 0 0 4.8594 -5.2062 -5.6520 C 0 0 0 0 0 0 0 0 0 0 0 0 4.9574 -4.2602 -6.8341 C 0 0 0 0 0 0 0 0 0 0 0 0 3.6289 -3.5021 -6.9678 C 0 0 0 0 0 0 0 0 0 0 0 0 3.6238 -2.5571 -8.0782 C 0 0 0 0 0 0 0 0 0 0 0 0 3.4407 -1.2647 -8.0536 C 0 0 0 0 0 0 0 0 0 0 0 0 3.1980 -0.5347 -6.8077 C 0 0 0 0 0 0 0 0 0 0 0 0 4.2309 0.4919 -6.5584 C 0 0 0 0 0 0 0 0 0 0 0 0 5.0462 0.5683 -5.5383 C 0 0 0 0 0 0 0 0 0 0 0 0 5.0539 -0.3983 -4.4489 C 0 0 0 0 0 0 0 0 0 0 0 0 4.7332 0.2168 -3.1062 C 0 0 0 0 0 0 0 0 0 0 0 0 4.7819 -0.8078 -2.0036 C 0 0 0 0 0 0 0 0 0 0 0 0 4.4308 -0.2066 -0.6685 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5237 -1.2325 0.4501 C 0 0 0 0 0 0 0 0 0 0 0 0 4.1394 -0.6497 1.7684 C 0 0 0 0 0 0 0 0 0 0 0 0 2.7161 -0.1781 1.8752 C 0 0 0 0 0 0 0 0 0 0 0 0 1.7763 -1.2828 1.7422 C 0 0 0 0 0 0 0 0 0 0 0 0 2.2436 -2.4588 1.5736 O 0 0 0 0 0 0 0 0 0 0 0 0 0.3883 -1.1797 1.7885 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.3619 -2.3553 1.6712 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.8355 -2.2435 1.7547 C 0 0 2 0 0 0 0 0 0 0 0 0 -2.3607 -3.5978 2.2087 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.6301 -3.4527 2.7507 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.2702 -4.8988 3.2764 P 0 0 0 0 0 5 0 0 0 0 0 0 -3.8484 -6.0723 2.4360 O 0 0 0 0 0 0 0 0 0 0 0 0 -5.9768 -4.7836 3.1312 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.9317 -5.2159 4.8935 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.3921 -3.9515 5.8978 P 0 0 0 0 0 5 0 0 0 0 0 0 -5.8257 -3.5353 5.6089 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.3675 -4.4654 7.5202 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.3318 -2.6627 5.6436 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.4737 -2.4771 6.7195 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.5324 -1.3191 6.4619 C 0 0 1 0 0 0 0 0 0 0 0 0 -2.2479 -0.1255 6.2629 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.1867 0.8074 6.2490 C 0 0 1 0 0 0 0 0 0 0 0 0 -1.6865 2.1608 6.1396 N 0 0 0 0 0 0 0 0 0 0 0 0 -0.9271 3.0954 5.5438 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.3546 4.4122 5.4119 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.5935 4.7672 5.9077 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.0617 6.1176 5.7922 N 0 0 0 0 0 0 0 0 0 0 0 0 -3.3349 3.8079 6.5007 N 0 0 0 0 0 0 0 0 0 0 0 0 -2.8846 2.5427 6.6089 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.5652 1.6242 7.1636 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.5278 0.5229 7.5632 C 0 0 0 0 0 0 0 0 0 0 0 0 0.8068 0.8475 7.4495 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.6931 -0.9950 7.6623 C 0 0 1 0 0 0 0 0 0 0 0 0 -1.3298 -1.3333 8.8599 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.5815 -1.6264 0.8068 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.2866 -0.4697 0.9397 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.1979 0.1186 2.0489 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.1579 0.1602 -0.0856 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.6102 1.5431 0.3503 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.6378 2.0308 -0.6351 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.1937 3.3791 -0.4129 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.4193 4.5907 -0.7570 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.0410 4.6159 -0.2678 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.2920 5.9340 -0.5329 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.3695 6.4280 -1.8731 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.4333 6.5380 -2.7455 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.0439 6.1847 -2.6523 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.4659 5.5198 -1.5149 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.0066 4.2524 -1.7374 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.0680 3.5670 -3.0268 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.9072 2.3494 -3.1219 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.6099 1.1734 -2.3123 C 0 0 0 0 0 0 0 0 0 0 0 0 0.7206 0.5103 -2.5044 C 0 0 0 0 0 0 0 0 0 0 0 0 0.7030 -0.6985 -1.5529 C 0 0 0 0 0 0 0 0 0 0 0 0 5.3020 -7.6848 -4.4645 H 0 0 0 0 0 0 0 0 0 0 0 0 7.0635 -7.4246 -4.2471 H 0 0 0 0 0 0 0 0 0 0 0 0 5.9060 -6.4175 -3.3475 H 0 0 0 0 0 0 0 0 0 0 0 0 6.2811 -6.6053 -6.4001 H 0 0 0 0 0 0 0 0 0 0 0 0 7.0293 -5.3265 -5.3950 H 0 0 0 0 0 0 0 0 0 0 0 0 4.0551 -5.9471 -5.9063 H 0 0 0 0 0 0 0 0 0 0 0 0 4.5415 -4.6897 -4.7354 H 0 0 0 0 0 0 0 0 0 0 0 0 5.1786 -4.8029 -7.7651 H 0 0 0 0 0 0 0 0 0 0 0 0 5.7637 -3.5248 -6.6632 H 0 0 0 0 0 0 0 0 0 0 0 0 2.8141 -4.2756 -7.0681 H 0 0 0 0 0 0 0 0 0 0 0 0 3.4652 -3.0306 -6.0042 H 0 0 0 0 0 0 0 0 0 0 0 0 3.8026 -2.9983 -9.0926 H 0 0 0 0 0 0 0 0 0 0 0 0 3.4647 -0.6810 -8.9786 H 0 0 0 0 0 0 0 0 0 0 0 0 2.1813 -0.0044 -6.9643 H 0 0 0 0 0 0 0 0 0 0 0 0 3.0540 -1.1685 -5.9418 H 0 0 0 0 0 0 0 0 0 0 0 0 4.3277 1.3005 -7.3343 H 0 0 0 0 0 0 0 0 0 0 0 0 5.7601 1.4203 -5.5246 H 0 0 0 0 0 0 0 0 0 0 0 0 4.3688 -1.2255 -4.6296 H 0 0 0 0 0 0 0 0 0 0 0 0 6.0636 -0.8796 -4.3152 H 0 0 0 0 0 0 0 0 0 0 0 0 5.4525 1.0330 -2.9550 H 0 0 0 0 0 0 0 0 0 0 0 0 3.7267 0.6717 -3.1298 H 0 0 0 0 0 0 0 0 0 0 0 0 4.0708 -1.6233 -2.2351 H 0 0 0 0 0 0 0 0 0 0 0 0 5.8305 -1.1869 -1.9632 H 0 0 0 0 0 0 0 0 0 0 0 0 3.5361 0.4076 -0.6489 H 0 0 0 0 0 0 0 0 0 0 0 0 5.2834 0.5105 -0.4455 H 0 0 0 0 0 0 0 0 0 0 0 0 4.0549 -2.1895 0.1930 H 0 0 0 0 0 0 0 0 0 0 0 0 5.6249 -1.4800 0.5385 H 0 0 0 0 0 0 0 0 0 0 0 0 4.7887 0.2657 1.9011 H 0 0 0 0 0 0 0 0 0 0 0 0 4.4210 -1.3448 2.5672 H 0 0 0 0 0 0 0 0 0 0 0 0 2.5677 0.6451 1.1483 H 0 0 0 0 0 0 0 0 0 0 0 0 2.6026 0.2656 2.8928 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.0103 -2.9592 0.7965 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.0438 -2.9935 2.5548 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.9927 -1.5993 2.7173 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.2945 -4.3655 1.4317 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.6946 -3.9153 3.0378 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.2761 -5.0475 2.2231 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.9255 -5.2658 7.6041 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.0042 -2.3860 7.6768 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.8184 -3.3979 6.7919 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.8792 -1.4930 5.6038 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.5075 0.5184 5.4442 H 0 0 0 0 0 0 0 0 0 0 0 0 0.0491 2.8139 5.1515 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.7637 5.1809 4.9382 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.0542 6.7313 6.6260 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.4183 6.5260 4.9028 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.0183 1.0132 8.4334 H 0 0 0 0 0 0 0 0 0 0 0 0 1.2973 0.0490 7.1300 H 0 0 0 0 0 0 0 0 0 0 0 0 0.2923 -1.4958 7.5508 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.6723 -1.7353 9.4882 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.0929 -0.4214 -0.2324 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.6835 0.2679 -1.0715 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.1856 1.3359 1.3208 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.7903 2.1826 0.5984 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.2145 2.0019 -1.6922 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.4784 1.2784 -0.7046 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.5289 3.5267 0.6635 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.1801 3.4558 -0.9717 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.4720 4.7892 -1.8921 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.9780 5.4748 -0.2975 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.0367 4.4066 0.8175 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.3958 3.8596 -0.8016 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.3657 5.9744 0.0226 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.9547 6.6724 0.0903 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.4023 6.7780 -2.2371 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.7328 6.9838 -3.7649 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.6630 5.7969 -3.6298 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.4838 7.2357 -2.6657 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.3143 5.9353 -0.5135 H 0 0 0 0 0 0 0 0 0 0 0 0 0.4264 3.7736 -0.8474 H 0 0 0 0 0 0 0 0 0 0 0 0 1.0329 3.1750 -3.1366 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.1794 4.1385 -3.9338 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.9600 2.6762 -2.8337 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.0493 2.0679 -4.2123 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.7130 1.3683 -1.2223 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.3946 0.4029 -2.5257 H 0 0 0 0 0 0 0 0 0 0 0 0 0.8858 0.0944 -3.5018 H 0 0 0 0 0 0 0 0 0 0 0 0 1.5758 1.1074 -2.2131 H 0 0 0 0 0 0 0 0 0 0 0 0 1.6851 -0.9679 -1.1867 H 0 0 0 0 0 0 0 0 0 0 0 0 0.0128 -0.4851 -0.7387 H 0 0 0 0 0 0 0 0 0 0 0 0 0.3282 -1.5948 -2.1276 H 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 1 0 4 5 1 0 5 6 1 0 6 7 2 0 7 8 1 0 8 9 1 0 9 10 2 0 10 11 1 0 11 12 1 0 12 13 1 0 13 14 1 0 14 15 1 0 15 16 1 0 16 17 1 0 17 18 1 0 18 19 2 0 18 20 1 0 20 21 1 0 21 22 1 0 22 23 1 0 23 24 1 0 24 25 1 0 25 26 2 0 25 27 1 0 25 28 1 0 28 29 1 0 29 30 2 0 29 31 1 0 29 32 1 0 32 33 1 0 33 34 1 0 34 35 1 0 35 36 1 0 36 37 1 0 37 38 1 0 38 39 2 0 39 40 1 0 40 41 1 0 40 42 2 0 42 43 1 0 43 44 2 0 36 45 1 0 45 46 1 0 45 47 1 0 47 48 1 0 22 49 1 0 49 50 1 0 50 51 2 0 50 52 1 0 52 53 1 0 53 54 1 0 54 55 1 0 55 56 1 0 56 57 1 0 57 58 1 0 58 59 1 0 59 60 2 0 60 61 1 0 61 62 1 0 62 63 2 0 63 64 1 0 64 65 1 0 65 66 1 0 66 67 1 0 67 68 1 0 47 34 1 0 43 37 1 0 1 69 1 0 1 70 1 0 1 71 1 0 2 72 1 0 2 73 1 0 3 74 1 0 3 75 1 0 4 76 1 0 4 77 1 0 5 78 1 0 5 79 1 0 6 80 1 0 7 81 1 0 8 82 1 0 8 83 1 0 9 84 1 0 10 85 1 0 11 86 1 0 11 87 1 0 12 88 1 0 12 89 1 0 13 90 1 0 13 91 1 0 14 92 1 0 14 93 1 0 15 94 1 0 15 95 1 0 16 96 1 0 16 97 1 0 17 98 1 0 17 99 1 0 21100 1 0 21101 1 0 22102 1 1 23103 1 0 23104 1 0 27105 1 0 31106 1 0 33107 1 0 33108 1 0 34109 1 6 36110 1 6 38111 1 0 39112 1 0 41113 1 0 41114 1 0 45115 1 0 46116 1 0 47117 1 6 48118 1 0 52119 1 0 52120 1 0 53121 1 0 53122 1 0 54123 1 0 54124 1 0 55125 1 0 55126 1 0 56127 1 0 56128 1 0 57129 1 0 57130 1 0 58131 1 0 58132 1 0 59133 1 0 60134 1 0 61135 1 0 61136 1 0 62137 1 0 63138 1 0 64139 1 0 64140 1 0 65141 1 0 65142 1 0 66143 1 0 66144 1 0 67145 1 0 67146 1 0 68147 1 0 68148 1 0 68149 1 0 M END PDB for #<Metabolite:0x00007f536308d050>HEADER PROTEIN 30-MAR-20 NONE TITLE NULL COMPND MOLECULE: CDP-DG(18:2(9Z,12Z)/18:2(9Z,12Z)) SOURCE NULL KEYWDS NULL EXPDTA NULL AUTHOR Marvin REVDAT 1 30-MAR-20 0 HETATM 1 C UNK 0 32.564 -7.496 0.000 0.00 0.00 C+0 HETATM 2 C UNK 0 30.770 -8.532 0.000 0.00 0.00 C+0 HETATM 3 C UNK 0 28.976 -7.496 0.000 0.00 0.00 C+0 HETATM 4 O UNK 0 34.358 -8.532 0.000 0.00 0.00 O+0 HETATM 5 O UNK 0 27.181 -8.532 0.000 0.00 0.00 O+0 HETATM 6 O UNK 0 29.370 -10.604 0.000 0.00 0.00 O+0 HETATM 7 H UNK 0 32.332 -10.683 0.000 0.00 0.00 H+0 HETATM 8 P UNK 0 36.357 -7.853 0.000 0.00 0.00 P+0 HETATM 9 O UNK 0 36.357 -9.962 0.000 0.00 0.00 O+0 HETATM 10 O UNK 0 38.832 -8.477 0.000 0.00 0.00 O+0 HETATM 11 O UNK 0 36.357 -5.947 0.000 0.00 0.00 O+0 HETATM 12 P UNK 0 40.830 -7.798 0.000 0.00 0.00 P+0 HETATM 13 O UNK 0 40.830 -9.907 0.000 0.00 0.00 O+0 HETATM 14 O UNK 0 43.305 -8.422 0.000 0.00 0.00 O+0 HETATM 15 O UNK 0 40.830 -5.892 0.000 0.00 0.00 O+0 HETATM 16 C UNK 0 46.963 -12.597 0.000 0.00 0.00 C+0 HETATM 17 C UNK 0 50.084 -12.597 0.000 0.00 0.00 C+0 HETATM 18 C UNK 0 51.776 -10.958 0.000 0.00 0.00 C+0 HETATM 19 O UNK 0 48.636 -9.722 0.000 0.00 0.00 O+0 HETATM 20 C UNK 0 44.997 -10.940 0.000 0.00 0.00 C+0 HETATM 21 O UNK 0 50.093 -14.090 0.000 0.00 0.00 O+0 HETATM 22 O UNK 0 46.952 -14.112 0.000 0.00 0.00 O+0 HETATM 23 C UNK 0 44.990 -9.400 0.000 0.00 0.00 C+0 HETATM 24 N UNK 0 53.036 -6.313 0.000 0.00 0.00 N+0 HETATM 25 C UNK 0 53.036 -7.853 0.000 0.00 0.00 C+0 HETATM 26 C UNK 0 51.702 -5.543 0.000 0.00 0.00 C+0 HETATM 27 N UNK 0 51.702 -8.623 0.000 0.00 0.00 N+0 HETATM 28 C UNK 0 50.368 -6.313 0.000 0.00 0.00 C+0 HETATM 29 C UNK 0 50.368 -7.853 0.000 0.00 0.00 C+0 HETATM 30 N UNK 0 51.702 -4.003 0.000 0.00 0.00 N+0 HETATM 31 O UNK 0 54.342 -8.403 0.000 0.00 0.00 O+0 HETATM 32 C UNK 0 25.847 -7.762 0.000 0.00 0.00 C+0 HETATM 33 O UNK 0 25.847 -6.322 0.000 0.00 0.00 O+0 HETATM 34 C UNK 0 24.514 -8.533 0.000 0.00 0.00 C+0 HETATM 35 C UNK 0 23.181 -7.762 0.000 0.00 0.00 C+0 HETATM 36 C UNK 0 21.848 -8.533 0.000 0.00 0.00 C+0 HETATM 37 C UNK 0 20.515 -7.762 0.000 0.00 0.00 C+0 HETATM 38 C UNK 0 19.182 -8.533 0.000 0.00 0.00 C+0 HETATM 39 C UNK 0 17.849 -7.762 0.000 0.00 0.00 C+0 HETATM 40 C UNK 0 16.516 -8.533 0.000 0.00 0.00 C+0 HETATM 41 C UNK 0 15.183 -7.762 0.000 0.00 0.00 C+0 HETATM 42 C UNK 0 13.643 -7.762 0.000 0.00 0.00 C+0 HETATM 43 C UNK 0 12.310 -8.533 0.000 0.00 0.00 C+0 HETATM 44 C UNK 0 10.977 -7.762 0.000 0.00 0.00 C+0 HETATM 45 C UNK 0 9.437 -7.762 0.000 0.00 0.00 C+0 HETATM 46 C UNK 0 8.104 -8.533 0.000 0.00 0.00 C+0 HETATM 47 C UNK 0 6.771 -7.762 0.000 0.00 0.00 C+0 HETATM 48 C UNK 0 5.438 -8.533 0.000 0.00 0.00 C+0 HETATM 49 C UNK 0 4.104 -7.762 0.000 0.00 0.00 C+0 HETATM 50 C UNK 0 2.771 -8.533 0.000 0.00 0.00 C+0 HETATM 51 C UNK 0 28.036 -11.374 0.000 0.00 0.00 C+0 HETATM 52 O UNK 0 28.036 -12.814 0.000 0.00 0.00 O+0 HETATM 53 C UNK 0 26.703 -10.603 0.000 0.00 0.00 C+0 HETATM 54 C UNK 0 25.370 -11.374 0.000 0.00 0.00 C+0 HETATM 55 C UNK 0 24.037 -10.603 0.000 0.00 0.00 C+0 HETATM 56 C UNK 0 22.704 -11.374 0.000 0.00 0.00 C+0 HETATM 57 C UNK 0 21.371 -10.603 0.000 0.00 0.00 C+0 HETATM 58 C UNK 0 20.038 -11.374 0.000 0.00 0.00 C+0 HETATM 59 C UNK 0 18.705 -10.603 0.000 0.00 0.00 C+0 HETATM 60 C UNK 0 17.372 -11.374 0.000 0.00 0.00 C+0 HETATM 61 C UNK 0 15.832 -11.374 0.000 0.00 0.00 C+0 HETATM 62 C UNK 0 14.498 -10.603 0.000 0.00 0.00 C+0 HETATM 63 C UNK 0 13.165 -11.374 0.000 0.00 0.00 C+0 HETATM 64 C UNK 0 11.625 -11.374 0.000 0.00 0.00 C+0 HETATM 65 C UNK 0 10.292 -10.603 0.000 0.00 0.00 C+0 HETATM 66 C UNK 0 8.959 -11.374 0.000 0.00 0.00 C+0 HETATM 67 C UNK 0 7.626 -10.603 0.000 0.00 0.00 C+0 HETATM 68 C UNK 0 6.293 -11.374 0.000 0.00 0.00 C+0 HETATM 69 C UNK 0 4.960 -10.603 0.000 0.00 0.00 C+0 CONECT 1 2 4 CONECT 2 1 6 7 3 CONECT 3 2 5 CONECT 4 1 8 CONECT 5 3 32 CONECT 6 2 51 CONECT 7 2 CONECT 8 4 9 10 11 CONECT 9 8 CONECT 10 8 12 CONECT 11 8 CONECT 12 10 13 14 15 CONECT 13 12 CONECT 14 12 23 CONECT 15 12 CONECT 16 17 22 20 CONECT 17 16 18 21 CONECT 18 19 17 27 CONECT 19 18 20 CONECT 20 19 16 23 CONECT 21 17 CONECT 22 16 CONECT 23 14 20 CONECT 24 25 26 CONECT 25 24 27 31 CONECT 26 24 28 30 CONECT 27 18 25 29 CONECT 28 26 29 CONECT 29 27 28 CONECT 30 26 CONECT 31 25 CONECT 32 5 33 34 CONECT 33 32 CONECT 34 32 35 CONECT 35 34 36 CONECT 36 35 37 CONECT 37 36 38 CONECT 38 37 39 CONECT 39 38 40 CONECT 40 39 41 CONECT 41 40 42 CONECT 42 41 43 CONECT 43 42 44 CONECT 44 43 45 CONECT 45 44 46 CONECT 46 45 47 CONECT 47 46 48 CONECT 48 47 49 CONECT 49 48 50 CONECT 50 49 CONECT 51 6 52 53 CONECT 52 51 CONECT 53 51 54 CONECT 54 53 55 CONECT 55 54 56 CONECT 56 55 57 CONECT 57 56 58 CONECT 58 57 59 CONECT 59 58 60 CONECT 60 59 61 CONECT 61 60 62 CONECT 62 61 63 CONECT 63 62 64 CONECT 64 63 65 CONECT 65 64 66 CONECT 66 65 67 CONECT 67 66 68 CONECT 68 67 69 CONECT 69 68 MASTER 0 0 0 0 0 0 0 0 69 0 140 0 END 3D PDB for #<Metabolite:0x00007f536308d050>COMPND HMDB0115969 HETATM 1 C1 UNL 1 6.059 -6.915 -4.320 1.00 0.00 C HETATM 2 C2 UNL 1 6.138 -5.977 -5.482 1.00 0.00 C HETATM 3 C3 UNL 1 4.859 -5.206 -5.652 1.00 0.00 C HETATM 4 C4 UNL 1 4.957 -4.260 -6.834 1.00 0.00 C HETATM 5 C5 UNL 1 3.629 -3.502 -6.968 1.00 0.00 C HETATM 6 C6 UNL 1 3.624 -2.557 -8.078 1.00 0.00 C HETATM 7 C7 UNL 1 3.441 -1.265 -8.054 1.00 0.00 C HETATM 8 C8 UNL 1 3.198 -0.535 -6.808 1.00 0.00 C HETATM 9 C9 UNL 1 4.231 0.492 -6.558 1.00 0.00 C HETATM 10 C10 UNL 1 5.046 0.568 -5.538 1.00 0.00 C HETATM 11 C11 UNL 1 5.054 -0.398 -4.449 1.00 0.00 C HETATM 12 C12 UNL 1 4.733 0.217 -3.106 1.00 0.00 C HETATM 13 C13 UNL 1 4.782 -0.808 -2.004 1.00 0.00 C HETATM 14 C14 UNL 1 4.431 -0.207 -0.669 1.00 0.00 C HETATM 15 C15 UNL 1 4.524 -1.232 0.450 1.00 0.00 C HETATM 16 C16 UNL 1 4.139 -0.650 1.768 1.00 0.00 C HETATM 17 C17 UNL 1 2.716 -0.178 1.875 1.00 0.00 C HETATM 18 C18 UNL 1 1.776 -1.283 1.742 1.00 0.00 C HETATM 19 O1 UNL 1 2.244 -2.459 1.574 1.00 0.00 O HETATM 20 O2 UNL 1 0.388 -1.180 1.789 1.00 0.00 O HETATM 21 C19 UNL 1 -0.362 -2.355 1.671 1.00 0.00 C HETATM 22 C20 UNL 1 -1.836 -2.243 1.755 1.00 0.00 C HETATM 23 C21 UNL 1 -2.361 -3.598 2.209 1.00 0.00 C HETATM 24 O3 UNL 1 -3.630 -3.453 2.751 1.00 0.00 O HETATM 25 P1 UNL 1 -4.270 -4.899 3.276 1.00 0.00 P HETATM 26 O4 UNL 1 -3.848 -6.072 2.436 1.00 0.00 O HETATM 27 O5 UNL 1 -5.977 -4.784 3.131 1.00 0.00 O HETATM 28 O6 UNL 1 -3.932 -5.216 4.894 1.00 0.00 O HETATM 29 P2 UNL 1 -4.392 -3.952 5.898 1.00 0.00 P HETATM 30 O7 UNL 1 -5.826 -3.535 5.609 1.00 0.00 O HETATM 31 O8 UNL 1 -4.368 -4.465 7.520 1.00 0.00 O HETATM 32 O9 UNL 1 -3.332 -2.663 5.644 1.00 0.00 O HETATM 33 C22 UNL 1 -2.474 -2.477 6.720 1.00 0.00 C HETATM 34 C23 UNL 1 -1.532 -1.319 6.462 1.00 0.00 C HETATM 35 O10 UNL 1 -2.248 -0.125 6.263 1.00 0.00 O HETATM 36 C24 UNL 1 -1.187 0.807 6.249 1.00 0.00 C HETATM 37 N1 UNL 1 -1.686 2.161 6.140 1.00 0.00 N HETATM 38 C25 UNL 1 -0.927 3.095 5.544 1.00 0.00 C HETATM 39 C26 UNL 1 -1.355 4.412 5.412 1.00 0.00 C HETATM 40 C27 UNL 1 -2.593 4.767 5.908 1.00 0.00 C HETATM 41 N2 UNL 1 -3.062 6.118 5.792 1.00 0.00 N HETATM 42 N3 UNL 1 -3.335 3.808 6.501 1.00 0.00 N HETATM 43 C28 UNL 1 -2.885 2.543 6.609 1.00 0.00 C HETATM 44 O11 UNL 1 -3.565 1.624 7.164 1.00 0.00 O HETATM 45 C29 UNL 1 -0.528 0.523 7.563 1.00 0.00 C HETATM 46 O12 UNL 1 0.807 0.847 7.449 1.00 0.00 O HETATM 47 C30 UNL 1 -0.693 -0.995 7.662 1.00 0.00 C HETATM 48 O13 UNL 1 -1.330 -1.333 8.860 1.00 0.00 O HETATM 49 O14 UNL 1 -2.582 -1.626 0.807 1.00 0.00 O HETATM 50 C31 UNL 1 -3.287 -0.470 0.940 1.00 0.00 C HETATM 51 O15 UNL 1 -3.198 0.119 2.049 1.00 0.00 O HETATM 52 C32 UNL 1 -4.158 0.160 -0.086 1.00 0.00 C HETATM 53 C33 UNL 1 -4.610 1.543 0.350 1.00 0.00 C HETATM 54 C34 UNL 1 -5.638 2.031 -0.635 1.00 0.00 C HETATM 55 C35 UNL 1 -6.194 3.379 -0.413 1.00 0.00 C HETATM 56 C36 UNL 1 -5.419 4.591 -0.757 1.00 0.00 C HETATM 57 C37 UNL 1 -4.041 4.616 -0.268 1.00 0.00 C HETATM 58 C38 UNL 1 -3.292 5.934 -0.533 1.00 0.00 C HETATM 59 C39 UNL 1 -3.369 6.428 -1.873 1.00 0.00 C HETATM 60 C40 UNL 1 -2.433 6.538 -2.746 1.00 0.00 C HETATM 61 C41 UNL 1 -1.044 6.185 -2.652 1.00 0.00 C HETATM 62 C42 UNL 1 -0.466 5.520 -1.515 1.00 0.00 C HETATM 63 C43 UNL 1 -0.007 4.252 -1.737 1.00 0.00 C HETATM 64 C44 UNL 1 -0.068 3.567 -3.027 1.00 0.00 C HETATM 65 C45 UNL 1 -0.907 2.349 -3.122 1.00 0.00 C HETATM 66 C46 UNL 1 -0.610 1.173 -2.312 1.00 0.00 C HETATM 67 C47 UNL 1 0.721 0.510 -2.504 1.00 0.00 C HETATM 68 C48 UNL 1 0.703 -0.699 -1.553 1.00 0.00 C HETATM 69 H1 UNL 1 5.302 -7.685 -4.464 1.00 0.00 H HETATM 70 H2 UNL 1 7.063 -7.425 -4.247 1.00 0.00 H HETATM 71 H3 UNL 1 5.906 -6.418 -3.348 1.00 0.00 H HETATM 72 H4 UNL 1 6.281 -6.605 -6.400 1.00 0.00 H HETATM 73 H5 UNL 1 7.029 -5.327 -5.395 1.00 0.00 H HETATM 74 H6 UNL 1 4.055 -5.947 -5.906 1.00 0.00 H HETATM 75 H7 UNL 1 4.542 -4.690 -4.735 1.00 0.00 H HETATM 76 H8 UNL 1 5.179 -4.803 -7.765 1.00 0.00 H HETATM 77 H9 UNL 1 5.764 -3.525 -6.663 1.00 0.00 H HETATM 78 H10 UNL 1 2.814 -4.276 -7.068 1.00 0.00 H HETATM 79 H11 UNL 1 3.465 -3.031 -6.004 1.00 0.00 H HETATM 80 H12 UNL 1 3.803 -2.998 -9.093 1.00 0.00 H HETATM 81 H13 UNL 1 3.465 -0.681 -8.979 1.00 0.00 H HETATM 82 H14 UNL 1 2.181 -0.004 -6.964 1.00 0.00 H HETATM 83 H15 UNL 1 3.054 -1.168 -5.942 1.00 0.00 H HETATM 84 H16 UNL 1 4.328 1.301 -7.334 1.00 0.00 H HETATM 85 H17 UNL 1 5.760 1.420 -5.525 1.00 0.00 H HETATM 86 H18 UNL 1 4.369 -1.225 -4.630 1.00 0.00 H HETATM 87 H19 UNL 1 6.064 -0.880 -4.315 1.00 0.00 H HETATM 88 H20 UNL 1 5.452 1.033 -2.955 1.00 0.00 H HETATM 89 H21 UNL 1 3.727 0.672 -3.130 1.00 0.00 H HETATM 90 H22 UNL 1 4.071 -1.623 -2.235 1.00 0.00 H HETATM 91 H23 UNL 1 5.831 -1.187 -1.963 1.00 0.00 H HETATM 92 H24 UNL 1 3.536 0.408 -0.649 1.00 0.00 H HETATM 93 H25 UNL 1 5.283 0.511 -0.446 1.00 0.00 H HETATM 94 H26 UNL 1 4.055 -2.190 0.193 1.00 0.00 H HETATM 95 H27 UNL 1 5.625 -1.480 0.538 1.00 0.00 H HETATM 96 H28 UNL 1 4.789 0.266 1.901 1.00 0.00 H HETATM 97 H29 UNL 1 4.421 -1.345 2.567 1.00 0.00 H HETATM 98 H30 UNL 1 2.568 0.645 1.148 1.00 0.00 H HETATM 99 H31 UNL 1 2.603 0.266 2.893 1.00 0.00 H HETATM 100 H32 UNL 1 -0.010 -2.959 0.797 1.00 0.00 H HETATM 101 H33 UNL 1 -0.044 -2.994 2.555 1.00 0.00 H HETATM 102 H34 UNL 1 -1.993 -1.599 2.717 1.00 0.00 H HETATM 103 H35 UNL 1 -2.294 -4.366 1.432 1.00 0.00 H HETATM 104 H36 UNL 1 -1.695 -3.915 3.038 1.00 0.00 H HETATM 105 H37 UNL 1 -6.276 -5.048 2.223 1.00 0.00 H HETATM 106 H38 UNL 1 -4.925 -5.266 7.604 1.00 0.00 H HETATM 107 H39 UNL 1 -3.004 -2.386 7.677 1.00 0.00 H HETATM 108 H40 UNL 1 -1.818 -3.398 6.792 1.00 0.00 H HETATM 109 H41 UNL 1 -0.879 -1.493 5.604 1.00 0.00 H HETATM 110 H42 UNL 1 -0.507 0.518 5.444 1.00 0.00 H HETATM 111 H43 UNL 1 0.049 2.814 5.151 1.00 0.00 H HETATM 112 H44 UNL 1 -0.764 5.181 4.938 1.00 0.00 H HETATM 113 H45 UNL 1 -3.054 6.731 6.626 1.00 0.00 H HETATM 114 H46 UNL 1 -3.418 6.526 4.903 1.00 0.00 H HETATM 115 H47 UNL 1 -1.018 1.013 8.433 1.00 0.00 H HETATM 116 H48 UNL 1 1.297 0.049 7.130 1.00 0.00 H HETATM 117 H49 UNL 1 0.292 -1.496 7.551 1.00 0.00 H HETATM 118 H50 UNL 1 -0.672 -1.735 9.488 1.00 0.00 H HETATM 119 H51 UNL 1 -5.093 -0.421 -0.232 1.00 0.00 H HETATM 120 H52 UNL 1 -3.683 0.268 -1.072 1.00 0.00 H HETATM 121 H53 UNL 1 -5.186 1.336 1.321 1.00 0.00 H HETATM 122 H54 UNL 1 -3.790 2.183 0.598 1.00 0.00 H HETATM 123 H55 UNL 1 -5.214 2.002 -1.692 1.00 0.00 H HETATM 124 H56 UNL 1 -6.478 1.278 -0.705 1.00 0.00 H HETATM 125 H57 UNL 1 -6.529 3.527 0.663 1.00 0.00 H HETATM 126 H58 UNL 1 -7.180 3.456 -0.972 1.00 0.00 H HETATM 127 H59 UNL 1 -5.472 4.789 -1.892 1.00 0.00 H HETATM 128 H60 UNL 1 -5.978 5.475 -0.297 1.00 0.00 H HETATM 129 H61 UNL 1 -4.037 4.407 0.817 1.00 0.00 H HETATM 130 H62 UNL 1 -3.396 3.860 -0.802 1.00 0.00 H HETATM 131 H63 UNL 1 -2.366 5.974 0.023 1.00 0.00 H HETATM 132 H64 UNL 1 -3.955 6.672 0.090 1.00 0.00 H HETATM 133 H65 UNL 1 -4.402 6.778 -2.237 1.00 0.00 H HETATM 134 H66 UNL 1 -2.733 6.984 -3.765 1.00 0.00 H HETATM 135 H67 UNL 1 -0.663 5.797 -3.630 1.00 0.00 H HETATM 136 H68 UNL 1 -0.484 7.236 -2.666 1.00 0.00 H HETATM 137 H69 UNL 1 -0.314 5.935 -0.513 1.00 0.00 H HETATM 138 H70 UNL 1 0.426 3.774 -0.847 1.00 0.00 H HETATM 139 H71 UNL 1 1.033 3.175 -3.137 1.00 0.00 H HETATM 140 H72 UNL 1 -0.179 4.138 -3.934 1.00 0.00 H HETATM 141 H73 UNL 1 -1.960 2.676 -2.834 1.00 0.00 H HETATM 142 H74 UNL 1 -1.049 2.068 -4.212 1.00 0.00 H HETATM 143 H75 UNL 1 -0.713 1.368 -1.222 1.00 0.00 H HETATM 144 H76 UNL 1 -1.395 0.403 -2.526 1.00 0.00 H HETATM 145 H77 UNL 1 0.886 0.094 -3.502 1.00 0.00 H HETATM 146 H78 UNL 1 1.576 1.107 -2.213 1.00 0.00 H HETATM 147 H79 UNL 1 1.685 -0.968 -1.187 1.00 0.00 H HETATM 148 H80 UNL 1 0.013 -0.485 -0.739 1.00 0.00 H HETATM 149 H81 UNL 1 0.328 -1.595 -2.128 1.00 0.00 H CONECT 1 2 69 70 71 CONECT 2 3 72 73 CONECT 3 4 74 75 CONECT 4 5 76 77 CONECT 5 6 78 79 CONECT 6 7 7 80 CONECT 7 8 81 CONECT 8 9 82 83 CONECT 9 10 10 84 CONECT 10 11 85 CONECT 11 12 86 87 CONECT 12 13 88 89 CONECT 13 14 90 91 CONECT 14 15 92 93 CONECT 15 16 94 95 CONECT 16 17 96 97 CONECT 17 18 98 99 CONECT 18 19 19 20 CONECT 20 21 CONECT 21 22 100 101 CONECT 22 23 49 102 CONECT 23 24 103 104 CONECT 24 25 CONECT 25 26 26 27 28 CONECT 27 105 CONECT 28 29 CONECT 29 30 30 31 32 CONECT 31 106 CONECT 32 33 CONECT 33 34 107 108 CONECT 34 35 47 109 CONECT 35 36 CONECT 36 37 45 110 CONECT 37 38 43 CONECT 38 39 39 111 CONECT 39 40 112 CONECT 40 41 42 42 CONECT 41 113 114 CONECT 42 43 CONECT 43 44 44 CONECT 45 46 47 115 CONECT 46 116 CONECT 47 48 117 CONECT 48 118 CONECT 49 50 CONECT 50 51 51 52 CONECT 52 53 119 120 CONECT 53 54 121 122 CONECT 54 55 123 124 CONECT 55 56 125 126 CONECT 56 57 127 128 CONECT 57 58 129 130 CONECT 58 59 131 132 CONECT 59 60 60 133 CONECT 60 61 134 CONECT 61 62 135 136 CONECT 62 63 63 137 CONECT 63 64 138 CONECT 64 65 139 140 CONECT 65 66 141 142 CONECT 66 67 143 144 CONECT 67 68 145 146 CONECT 68 147 148 149 END SMILES for #<Metabolite:0x00007f536308d050>[H][C@@](COC(=O)CCCCCCC\C=C/C\C=C/CCCCC)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H](C(O)[C@H]1O)N1C=CC(N)=NC1=O)OC(=O)CCCCCCC\C=C/C\C=C/CCCCC INCHI for #<Metabolite:0x00007f536308d050>InChI=1S/C48H81N3O15P2/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-43(52)61-37-40(64-44(53)34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2)38-62-67(57,58)66-68(59,60)63-39-41-45(54)46(55)47(65-41)51-36-35-42(49)50-48(51)56/h11-14,17-20,35-36,40-41,45-47,54-55H,3-10,15-16,21-34,37-39H2,1-2H3,(H,57,58)(H,59,60)(H2,49,50,56)/b13-11-,14-12-,19-17-,20-18-/t40-,41-,45+,46?,47-/m1/s1 3D Structure for #<Metabolite:0x00007f536308d050> | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Synonyms |
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Molecular Formula | C48H81N3O15P2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Average Mass | 1002.13 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Monoisotopic Mass | 1001.514292916 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IUPAC Name | {[(2R,3R,5R)-5-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}({[(2R)-2,3-bis[(9Z,12Z)-octadeca-9,12-dienoyloxy]propoxy](hydroxy)phosphoryl}oxy)phosphinic acid | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Traditional Name | [(2R,3R,5R)-5-(4-amino-2-oxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy([(2R)-2,3-bis[(9Z,12Z)-octadeca-9,12-dienoyloxy]propoxy(hydroxy)phosphoryl]oxy)phosphinic acid | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CAS Registry Number | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SMILES | [H][C@@](COC(=O)CCCCCCC\C=C/C\C=C/CCCCC)(COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H](C(O)[C@H]1O)N1C=CC(N)=NC1=O)OC(=O)CCCCCCC\C=C/C\C=C/CCCCC | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
InChI Identifier | InChI=1S/C48H81N3O15P2/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-43(52)61-37-40(64-44(53)34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2)38-62-67(57,58)66-68(59,60)63-39-41-45(54)46(55)47(65-41)51-36-35-42(49)50-48(51)56/h11-14,17-20,35-36,40-41,45-47,54-55H,3-10,15-16,21-34,37-39H2,1-2H3,(H,57,58)(H,59,60)(H2,49,50,56)/b13-11-,14-12-,19-17-,20-18-/t40-,41-,45+,46?,47-/m1/s1 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
InChI Key | ZANLCKMSXQYNAA-DTRGFOKRSA-N | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Chemical Taxonomy | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Description | Belongs to the class of organic compounds known as cdp-diacylglycerols. These are glycerolipids containing a diacylglycerol, with a cytidine diphosphate attached to the oxygen O1 or O2 of the glycerol part. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Kingdom | Organic compounds | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Super Class | Lipids and lipid-like molecules | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Class | Glycerophospholipids | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sub Class | CDP-glycerols | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Direct Parent | CDP-diacylglycerols | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Alternative Parents |
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Substituents |
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Molecular Framework | Aromatic heteromonocyclic compounds | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
External Descriptors | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Functional Ontology | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Not Available | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Physical Properties | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
State | Expected Solid | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Predicted Properties |
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Spectra | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Biological Properties | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Cellular Locations | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Biospecimen Locations | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Tissue Locations | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Associated OMIM IDs | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Human Proteins and Enzymes | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Human Pathways | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Pathways |
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Metabolic Reactions | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Reactions
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Health Effects and Bioactivity | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Microbial Sources | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Exposure Sources | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Host Biospecimen and Location | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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External Links | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
HMDB ID | HMDB0115969 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
DrugBank ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Phenol Explorer Compound ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
FooDB ID | FDB095759 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
KNApSAcK ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Chemspider ID | 74877707 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
KEGG Compound ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
BioCyc ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
BiGG ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Wikipedia Link | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
METLIN ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PubChem Compound | 131822625 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PDB ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ChEBI ID | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Food Biomarker Ontology | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
References | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Synthesis Reference | Not Available | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
General References |
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