MiMeDB: Bacteroides fragilis (MMDBm0000043)

Microbe Identification

Microbe name

Bacteroides fragilis

NCBI Taxonomy ID

817

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Bacteroidetes

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Species

fragilis

Microbe Properties

Gram staining properties

Positive

Shape

Bacilli

Mobility

Flagellar presence

Number of membranes

Oxygen preference

Anaerobe

Optimal temperature

Temperature range

Mesophilic

Habitat

HostAssociated

Biotic relationship

Free living

Cell arrangement

Singles

Sporulation

Not Available

Metabolism

Saccharolytic, fermentative

Energy source

Chemoorganotroph

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Gut	Feces	Not Available	GutFeeling KnowledgeBase	31509535
Human	Perianal space		Not Available	BacDive	34718743
Human	Rectum		Not Available	BacDive	34718743
Human	Large intestine	Feces	Not Available	Disbiome	27776263
Human	Bladder	Urine	Not Available	Disbiome	32111156

Health Effects

Host	Related Health Condition	Microbal response/effect	Data Source	Reference
Human	Alzheimer's Disease	Reduced	Disbiome	27776263
Human	Autism	Elevated	Disbiome	24130822
Human	Cholestasis	Reduced	Disbiome	31848302
Human	Chronic kidney disease	Reduced	Disbiome	28588309
Human	Colorectal cancer	Reduced	Disbiome	23306850
Human	Colorectal cancer	Elevated	Disbiome	25432777
Human	Crohn's disease	Reduced	Disbiome	20848492
Human	Crohn's disease	Elevated	Disbiome	25986361
Human	Crohn's disease	Reduced	Disbiome	29533950
Human	Inflammatory bowel disease	Elevated	Disbiome	30567928
Human	Irritable bowel syndrome	Reduced	Disbiome	21820992
Human	Keratitis	Elevated	Disbiome	29933394
Human	Multiple system atrophy	Elevated	Disbiome	29083071
Human	Obesity	Elevated	Disbiome	26551842
Human	Parkinson's disease	Reduced	Disbiome	26539989
Human	Rheumatoid arthritis	Reduced	Disbiome	18528968
Human	Schizophrenia	Elevated	Disbiome	29352709
Human	Ulcerative colitis	Reduced	Disbiome	27824645
Human	Ulcerative colitis	Elevated	Disbiome	29533950
Human	Non-alcoholic fatty liver disease	Reduced	Disbiome	31726978
Human	Diverticular disease	Reduced	Disbiome	29533950

Related Metabolites

Metabolic Reactions

Reactions

This table shows at most 10 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0025330	Tetracycline	11a-Hydroxytetracycline	Flavin-dependent monooxygenase	Oxygenation	RHEA	34755880
MMDBr0025737	Hydrogen Ion	Water	Flavin-dependent monooxygenase	Oxygenation	RHEA	34755880
MMDBr0025738	Oxytetracycline	11a-Hydroxy-oxytetracycline	Flavin-dependent monooxygenase	Oxygenation	RHEA	34755880
MMDBr0024552	S-Adenosylmethionine	S-Adenosylhomocysteine	Malonyl-[acyl-carrier protein] O-methyltransferase	Methylation	RHEA	34755880
MMDBr0024707	di-mu-Sulfido-diiron(1+)	5'-Deoxyadenosine	Biotin synthase	Synthesis	RHEA	34755880
MMDBr0024345	L-Tyrosine	Hydrogen Ion	Tyrosine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024360	L-Valine	diphosphate	Valine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024368	L-Isoleucine	diphosphate	Isoleucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024371	L-Asparagine	Hydrogen Ion	Asparagine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024389	L-Leucine	diphosphate	Leucine--tRNA ligase	Ligation	RHEA	34755880

Genome Data

Genome Link

MMDBm0000043

Genome Length

5224285 bp

# Predicted Proteins

4391

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-25 18:14:50 UTC

Reference

PMID: 17704766

Source Links

GenBank

NZ_CP069563

MiMeDB ID	Organism	Strain	Serotype	Variant	NCBI Taxonomy	BaSyS2 Genome
MMDBm0000044	Bacteroides fragilis 3_1_12	-	-	-	457424	View
MMDBm0000045	Bacteroides fragilis 638R	638R	-	-	862962	View
MMDBm0000046	Bacteroides fragilis NCTC 9343	NCTC 9343	-	-	272559	View
MMDBm0000047	Bacteroides fragilis YCH46	YCH46	-	-	295405	View