MiMeDB: Bacteroides vulgatus (MMDBm0000056)

Microbe Identification

Microbe name

Bacteroides vulgatus

NCBI Taxonomy ID

821

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Bacteroidetes

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Species

Bacteroides vulgatus

Microbe Properties

Gram staining properties

Positive

Shape

Bacilli

Mobility

Flagellar presence

Number of membranes

Oxygen preference

Anaerobe

Optimal temperature

Not Available

Temperature range

Mesophilic

Habitat

HostAssociated

Biotic relationship

Free living

Cell arrangement

Singles

Sporulation

Not Available

Metabolism

Not Available

Energy source

Not Available

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Gut	Feces	Not Available	GutFeeling KnowledgeBase	31509535
Human		Stool	Not Available	Human Microbiome Project	28953883
Human	Large intestine		Not Available	BacDive	34718743
Human	Large intestine	Feces	Not Available	Disbiome	29411528

Health Effects

Host	Related Health Condition	Microbal response/effect	Data Source	Reference
Human	Amyotrophic lateral sclerosis	Elevated	Disbiome	28947596
Human	Autism	Elevated	Disbiome	20603222
Human	Autism	Elevated	Disbiome	24130822
Human	Crohn's disease	Reduced	Disbiome	20848492
Human	Crohn's disease	Elevated	Disbiome	18401439
Human	Cystic fibrosis	Reduced	Disbiome	24178246
Human	Inflammatory bowel disease	Elevated	Disbiome	30567928
Human	Irritable bowel syndrome	Reduced	Disbiome	21741921
Human	Irritable bowel syndrome	Reduced	Disbiome	21820992
Human	Obesity	Reduced	Disbiome	23631345
Human	Obesity	Elevated	Disbiome	26551842
Human	Systemic Lupus Erythematosus	Elevated	Disbiome	30416033

Related Metabolites

Metabolic Reactions

Reactions

This table shows at most 10 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0024345	L-Tyrosine	Hydrogen Ion	Tyrosine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024360	L-Valine	diphosphate	Valine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024371	L-Asparagine	Hydrogen Ion	Asparagine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024389	L-Leucine	diphosphate	Leucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024403	Hydrogen Ion	Carbon dioxide	3-oxoacyl-[acyl-carrier-protein] synthase 3	Synthesis	RHEA	34755880
MMDBr0024418	L-Alanine	diphosphate	Alanine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024449	L-Methionine	diphosphate	Methionine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024474	L-Proline	diphosphate	Proline--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024539	Tetra-mu3-sulfido-tetrairon(2+)	5'-Deoxyadenosine	Lipoyl synthase	Synthesis	RHEA	34755880
MMDBr0024548	(6S)-5,6,7,8-tetrahydrofolic acid	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolic acid	Probable aminomethyltransferase	Methylation	RHEA	34755880

Genome Data

Genome Link

MMDBm0000056

Genome Length

5028006 bp

# Predicted Proteins

4230

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-25 18:15:00 UTC

Reference

PMID: 17704766

Source Links

GenBank

NZ_AP025240