MiMeDB: Clostridium perfringens (MMDBm0000131)

Microbe Identification

Microbe name

Clostridium perfringens

NCBI Taxonomy ID

1502

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Firmicutes

Class

Clostridia

Order

Clostridiales

Family

Clostridiaceae

Genus

Clostridium

Species

perfringens

Microbe Properties

Gram staining properties

Positive

Shape

Bacilli

Mobility

Yes

Flagellar presence

No?

Number of membranes

Oxygen preference

Anaerobe

Optimal temperature

Temperature range

Mesophilic

Habitat

HostAssociated

Biotic relationship

Free living

Cell arrangement

Pairs - Singles - Chains

Sporulation

Pairs - Singles - Chains

Metabolism

Saccharolytic, fermentative

Energy source

Chemoorganotroph

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Lung		Not Available	BacDive	34718743
Human	Large intestine		Not Available	BacDive	34718743
Human	Gallbladder		Not Available	BacDive	34718743
Human	Large intestine	Feces	Not Available	Disbiome	12173102

Health Effects

Host	Related Health Condition	Microbal response/effect	Data Source	Reference
Human	Autism	Reduced	Disbiome	12173102
Human	Cystic fibrosis	Elevated	Disbiome	31959989
Human	Multiple sclerosis	Elevated	Disbiome	30417113
Human	Rheumatoid arthritis	Elevated	Disbiome	2889500
Human	Schizophrenia	Elevated	Disbiome	31255682

Related Metabolites

Metabolic Reactions

Reactions

This table shows at most 10 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0025091	S-Adenosylmethionine	S-Adenosylhomocysteine	rRNA adenine N-6-methyltransferase	Methylation	RHEA	34755880
MMDBr0024345	L-Tyrosine	Hydrogen Ion	Tyrosine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024371	L-Asparagine	Hydrogen Ion	Asparagine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024389	L-Leucine	diphosphate	Leucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024401	L-Serine	Adenosine 3',5'-diphosphate	Holo-[acyl-carrier-protein] synthase	Dehydrogenation; Synthesis	RHEA	34755880
MMDBr0024403	Hydrogen Ion	Carbon dioxide	3-oxoacyl-[acyl-carrier-protein] synthase 3	Synthesis	RHEA	34755880
MMDBr0024411	L-Serine	Hydrogen Ion	Type-2 serine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024415	(S)-4-Amino-5-oxopentanoate	Hydrogen Ion	Glutamyl-tRNA reductase	Reduction	RHEA	34755880
MMDBr0024418	L-Alanine	diphosphate	Alanine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024435	Deoxyribose 5-phosphate	Acetaldehyde	Deoxyribose-phosphate aldolase	Aldol addition (or reverse)	RHEA	34755880

Genome Data

Genome Link

MMDBm0000131

Genome Length

3306661 bp

# Predicted Proteins

3052

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-25 17:24:22 UTC

Reference

PMID: 17704766

Source Links

GenBank

NZ_CP075979

MiMeDB ID	Organism	Strain	Serotype	Variant	NCBI Taxonomy	BaSyS2 Genome
MMDBm0000132	Clostridium perfringens ATCC 13124	ATCC 13124	-	-	195103	View
MMDBm0001454	Clostridium perfringens str. 13	13	-	-	195102	View
MMDBm0001477	Clostridium perfringens SM101	SM101	-	-	289380	View