MiMeDB: Flavobacterium johnsoniae (MMDBm0000404)

Microbe Identification

Microbe name

Flavobacterium johnsoniae

NCBI Taxonomy ID

986

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Bacteroidetes

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Species

johnsoniae

Microbe Properties

Gram staining properties

Positive

Shape

Bacilli

Mobility

Flagellar presence

Number of membranes

Oxygen preference

Aerobe

Optimal temperature

Temperature range

Mesophilic

Habitat

Multiple

Biotic relationship

Free living

Cell arrangement

Not Available

Sporulation

Nonsporulating

Metabolism

Chitin degradation

Energy source

Not Available

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Gut	Feces	Expected but not quantified	Manually Annotated	Not Available

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference

Related Metabolites

Metabolic Reactions

Reactions

This table shows at most 10 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0024345	L-Tyrosine	Hydrogen Ion	Tyrosine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024346	NAD	Hydrogen Ion	Enoyl-[acyl-carrier-protein] reductase [NADH]	Reduction; Synthesis	RHEA	34755880
MMDBr0024389	L-Leucine	diphosphate	Leucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024415	(S)-4-Amino-5-oxopentanoate	Hydrogen Ion	Glutamyl-tRNA reductase	Reduction	RHEA	34755880
MMDBr0024418	L-Alanine	diphosphate	Alanine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024424	S-Adenosylmethionine	S-Adenosylhomocysteine	Protein-L-isoaspartate O-methyltransferase	Methylation	RHEA	34755880
MMDBr0024449	L-Methionine	diphosphate	Methionine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024474	L-Proline	diphosphate	Proline--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024535	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA large subunit methyltransferase F	Methylation	RHEA	34755880
MMDBr0024539	Tetra-mu3-sulfido-tetrairon(2+)	5'-Deoxyadenosine	Lipoyl synthase	Synthesis	RHEA	34755880

Genome Data

Genome Link

MMDBm0000404

Genome Length

6183971 bp

# Predicted Proteins

5387

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-29 17:05:09 UTC

Reference

PMID: 17704766

Source Links

GenBank

NC_009441