MiMeDB: Pyrococcus abyssi (MMDBm0000623)

Microbe Identification

Microbe name

Pyrococcus abyssi

NCBI Taxonomy ID

29292

Microbe Taxonomy

Superkingdom

Archaea

Kingdom

Not Available

Phylum

Euryarchaeota

Class

Thermococci

Order

Thermococcales

Family

Thermococcaceae

Genus

Pyrococcus

Species

abyssi

Microbe Properties

Gram staining properties

Positive

Shape

Cocci

Mobility

Flagellar presence

Yes

Number of membranes

Oxygen preference

Anaerobe

Optimal temperature

103

Temperature range

Hyperthermophilic

Habitat

Aquatic

Biotic relationship

Free living

Cell arrangement

Not Available

Sporulation

Nonsporulating

Metabolism

Sulfur respiration

Energy source

Not Available

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Gut	Feces	Expected but not quantified	Manually Annotated	Not Available

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference

Related Metabolites

Metabolic Reactions

Reactions

This table shows at most 10 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0024345	L-Tyrosine	Hydrogen Ion	Tyrosine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024360	L-Valine	diphosphate	Valine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024368	L-Isoleucine	diphosphate	Isoleucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024371	L-Asparagine	Hydrogen Ion	Asparagine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024389	L-Leucine	diphosphate	Leucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024391	alpha-Ketoisovaleric acid	di-mu-Sulfido-diiron(1+)	Ketoisovalerate oxidoreductase subunit VorC	Redox reaction	RHEA	34755880
MMDBr0024411	L-Serine	Hydrogen Ion	Type-2 serine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024418	L-Alanine	diphosphate	Alanine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024421	Indolepyruvate	di-mu-Sulfido-diiron(1+)	Indolepyruvate oxidoreductase subunit IorA	Redox reaction	RHEA	34755880
MMDBr0024424	S-Adenosylmethionine	S-Adenosylhomocysteine	Protein-L-isoaspartate O-methyltransferase	Methylation	RHEA	34755880

Genome Data

Genome Link

MMDBm0000623

Genome Length

1790334 bp

# Predicted Proteins

1954

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-29 16:37:32 UTC

Reference

PMID: 17704766

Source Links

GenBank

NC_000868