MiMeDB: Rhodobacter sphaeroides (MMDBm0456231)

Microbe Identification

Microbe name

Rhodobacter sphaeroides

NCBI Taxonomy ID

1063

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Proteobacteria

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Rhodobacteraceae

Genus

Rhodobacter

Species

sphaeroides

Microbe Properties

Gram staining properties

Positive

Shape

Bacilli

Mobility

Yes

Flagellar presence

Yes

Number of membranes

Oxygen preference

Aerobe; anaerobe

Optimal temperature

Temperature range

Mesophilic

Habitat

Multiple

Biotic relationship

Free living

Cell arrangement

Chains

Sporulation

Not Available

Metabolism

Hydrogen production

Energy source

Photosynthetic

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Gut	Feces	Expected but not quantified	Manually Annotated	Not Available

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference

Related Metabolites

Metabolic Reactions

Reactions

This table shows at most 10 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0024345	L-Tyrosine	Hydrogen Ion	Tyrosine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024360	L-Valine	diphosphate	Valine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024361	NAD	Hydrogen Ion	Alcohol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024363	NAD	Hydrogen Ion	NAD-dependent alcohol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024389	L-Leucine	diphosphate	Leucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024401	L-Serine	Adenosine 3',5'-diphosphate	Holo-[acyl-carrier-protein] synthase	Dehydrogenation; Synthesis	RHEA	34755880
MMDBr0024403	Hydrogen Ion	Carbon dioxide	3-oxoacyl-[acyl-carrier-protein] synthase 3	Synthesis	RHEA	34755880
MMDBr0024418	L-Alanine	diphosphate	Alanine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024420	Glycerol 3-phosphate	CMP	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	Synthesis	RHEA	34755880
MMDBr0024424	S-Adenosylmethionine	S-Adenosylhomocysteine	Protein-L-isoaspartate O-methyltransferase	Methylation	RHEA	34755880

Genome Data

Genome Link

MMDBm0456231

Genome Length

1316185 bp

# Predicted Proteins

1176

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-29 16:10:22 UTC

Reference

PMID: 17704766

Source Links

GenBank

NC_011958

MiMeDB ID	Organism	Strain	Serotype	Variant	NCBI Taxonomy	BaSyS2 Genome
MMDBm0002439	Rhodobacter sphaeroides 2.4.1	2.4.1	-	-	272943	View
MMDBm0002440	Rhodobacter sphaeroides ATCC 17029	ATCC 17029	-	-	349101	View
MMDBm0002441	Rhodobacter sphaeroides ATCC 17025	ATCC 17025	-	-	349102	View
MMDBm0002442	Rhodobacter sphaeroides KD131	KD131	-	-	557760	View