MiMeDB: Rhodopseudomonas palustris (MMDBm0000412)

Microbe Identification

Microbe name

Rhodopseudomonas palustris

NCBI Taxonomy ID

1076

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Proteobacteria

Class

Alphaproteobacteria

Order

Rhizobiales

Family

Bradyrhizobiaceae

Genus

Rhodopseudomonas

Species

palustris

Microbe Properties

Gram staining properties

Positive

Shape

Bacilli

Mobility

Yes

Flagellar presence

Yes

Number of membranes

Oxygen preference

Aerobe; anaerobe

Optimal temperature

Temperature range

Mesophilic

Habitat

Soil

Biotic relationship

Free living

Cell arrangement

Singles

Sporulation

Not Available

Metabolism

Iron oxidizer

Energy source

Photolithoautotroph

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Gut	Feces	Expected but not quantified	Manually Annotated	Not Available

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference

Related Metabolites

Metabolic Reactions

Reactions

This table shows at most 10 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0024345	L-Tyrosine	Hydrogen Ion	Tyrosine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024360	L-Valine	diphosphate	Valine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024368	L-Isoleucine	diphosphate	Isoleucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024389	L-Leucine	diphosphate	Leucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024401	L-Serine	Adenosine 3',5'-diphosphate	Holo-[acyl-carrier-protein] synthase	Dehydrogenation; Synthesis	RHEA	34755880
MMDBr0024411	L-Serine	Hydrogen Ion	Type-2 serine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024418	L-Alanine	diphosphate	Alanine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024424	S-Adenosylmethionine	S-Adenosylhomocysteine	Protein-L-isoaspartate O-methyltransferase	Methylation	RHEA	34755880
MMDBr0024459	Uridine triphosphate	diphosphate	Bifunctional uridylyltransferase/uridylyl-removing enzyme	Transfer of an uridylyl group	RHEA	34755880
MMDBr0024474	L-Proline	diphosphate	Proline--tRNA ligase	Ligation	RHEA	34755880

Genome Data

Genome Link

MMDBm0000412

Genome Length

5526703 bp

# Predicted Proteins

5177

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-29 16:10:41 UTC

Reference

PMID: 17704766

Source Links

GenBank

NZ_CP066699

MiMeDB ID	Organism	Strain	Serotype	Variant	NCBI Taxonomy	BaSyS2 Genome
MMDBm0002449	Rhodopseudomonas palustris CGA009	CGA009	-	-	258594	View
MMDBm0002450	Rhodopseudomonas palustris HaA2	HaA2	-	-	316058	View
MMDBm0002451	Rhodopseudomonas palustris BisB18	BisB18	-	-	316056	View
MMDBm0002452	Rhodopseudomonas palustris BisB5	BisB5	-	-	316057	View
MMDBm0002453	Rhodopseudomonas palustris BisA53	BisA53	-	-	316055	View
MMDBm0002454	Rhodopseudomonas palustris TIE-1	TIE-1	-	-	395960	View