MiMeDB: Staphylococcus epidermidis (MMDBm0000425)

Microbe Identification

Microbe name

Staphylococcus epidermidis

NCBI Taxonomy ID

1282

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Firmicutes

Class

Bacilli

Order

Bacillales

Family

Staphylococcaceae

Genus

Staphylococcus

Species

epidermidis

Microbe Properties

Gram staining properties

Positive

Shape

Cocci

Mobility

Flagellar presence

Number of membranes

Oxygen preference

Facultative anaerobe

Optimal temperature

Temperature range

Mesophilic

Habitat

HostAssociated

Biotic relationship

Free living

Cell arrangement

Clusters - Singles

Sporulation

Clusters - Singles

Metabolism

Not Available

Energy source

Not Available

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human			Not Available	Human Oral Microbiome Database (HOMD)	20624719
Human			Not Available	Human Microbiome Project	28953883
Human	Fornix		Not Available	BacDive	34718743
Human	Vagina		Not Available	BacDive	34718743
Human	Skin		Not Available	BacDive	34718743
Human	Nasal cavity		Not Available	BacDive	34718743
Human	Nasopharynx		Not Available	Disbiome	26492486
Human	Oral cavity	Saliva	Not Available	Disbiome	31452955
Human	Skin		Not Available	Disbiome	31883828

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference
Human	Cystic fibrosis		Elevated	Disbiome	26492486
Human	Systemic Lupus Erythematosus		Elevated	Disbiome	31883828

Related Metabolites

Metabolic Reactions

Reactions

This table shows at most 10 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0024368	L-Isoleucine	diphosphate	Isoleucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024586	L-Serine	Hydrogen Ion	Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein	Phosphorylation; Synthesis	RHEA	34755880
MMDBr0024860	beta-D-GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-D-isoglutaminyl-L-Lys-(N(6)-Gly)-D-Ala-D-Ala)-di-trans,octa-cis-undecaprenyl diphosphate	MurNAc-L-Ala-D-isoglutaminyl-L-Lys-(N(6)-tri-Gly)-D-Ala-D-Ala-diphospho-di-trans,octa-cis-undecaprenyl-GlcNAc	Aminoacyltransferase FemA	Acylation	RHEA	34755880
MMDBr0024861	MurNAc-L-Ala-D-isoglutaminyl-L-Lys-(N(6)-tri-Gly)-D-Ala-D-Ala-diphospho-di-trans,octa-cis-undecaprenyl-GlcNAc	MurNAc-L-Ala-D-isoglutaminyl-L-Lys-(N(6)-penta-Gly)-D-Ala-D-Ala-diphospho-di-trans,octa-cis-undecaprenyl-GlcNAc	Aminoacyltransferase FemB	Acylation	RHEA	34755880
MMDBr0024908	D-Glucose	L-Histidine	PTS system glucose-specific EIICBA component	Phosphorylation	RHEA	34755880
MMDBr0025091	S-Adenosylmethionine	S-Adenosylhomocysteine	rRNA adenine N-6-methyltransferase	Methylation	RHEA	34755880
MMDBr0025237	L-Threonine	Hydrogen Ion	Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein	Phosphorylation; Synthesis	RHEA	34755880
MMDBr0024345	L-Tyrosine	Hydrogen Ion	Tyrosine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024349	Adenosine triphosphate	Hydrogen Ion	Diacylglycerol kinase	Phosphorylation	RHEA	34755880
MMDBr0024360	L-Valine	diphosphate	Valine--tRNA ligase	Ligation	RHEA	34755880

Genome Data

Genome Link

MMDBm0000425

Genome Length

2501738 bp

# Predicted Proteins

2382

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-25 17:21:34 UTC

Reference

PMID: 17704766

Source Links

GenBank

NZ_CP035288

MiMeDB ID	Organism	Strain	Serotype	Variant	NCBI Taxonomy	BaSyS2 Genome
MMDBm0002560	Staphylococcus epidermidis RP62A	RP62A	-	-	176279	View
MMDBm0002562	Staphylococcus epidermidis ATCC 12228	ATCC 12228	-	-	176280	View