MiMeDB: Staphylococcus aureus (MMDBm0000423)

Microbe Identification

Microbe name

Staphylococcus aureus

NCBI Taxonomy ID

1280

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Firmicutes

Class

Bacilli

Order

Bacillales

Family

Staphylococcaceae

Genus

Staphylococcus

Species

aureus

Subspecies

aureus

Microbe Properties

Gram staining properties

Positive

Shape

Cocci

Mobility

Flagellar presence

Number of membranes

Oxygen preference

Facultative

Optimal temperature

Temperature range

Mesophilic

Habitat

HostAssociated

Biotic relationship

Free living

Cell arrangement

Clusters - Singles

Sporulation

Clusters - Singles

Metabolism

Not Available

Energy source

Not Available

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human			Not Available	Human Oral Microbiome Database (HOMD)	20624719
Human			Not Available	Human Microbiome Project	28953883
Human	Fornix		Not Available	BacDive	34718743
Human	Skin		Not Available	BacDive	34718743
Human	Nasal cavity		Not Available	BacDive	34718743
Human	Large intestine		Not Available	BacDive	34718743
Human	Lung		Not Available	BacDive	34718743
Human	Oral cavity		Not Available	BacDive	34718743
Human	Gastrointestinal tract		Not Available	BacDive	34718743
Human	Trachea		Not Available	BacDive	34718743
Human	Nasopharynx		Not Available	BacDive	34718743
Human	Pharynx		Not Available	BacDive	34718743
Human	Vagina		Not Available	BacDive	34718743
Human	Lower respiratory tract		Not Available	BacDive	34718743
Human	Lung		Not Available	Disbiome	27388563
Human	Oral cavity	Subgingival plaque	Not Available	Disbiome	23060013
Human	Gingiva	Subgingival plaque	Not Available	Disbiome	23060013
Human	Oral cavity	Saliva	Not Available	Disbiome	29576948
Human	Skin		Not Available	Disbiome	31883828
Human	Nasopharynx		Not Available	Disbiome	26492486
Human	Large intestine	Feces	Not Available	Disbiome	18326589
Human	Nasal cavity		Not Available	Disbiome	30420263

Health Effects

Host	Related Health Condition	Microbal response/effect	Data Source	Reference
Human	Chronic sinusitis		BacDive
Human	Diarrhea		BacDive
Human	Chronic lung disease	Elevated	Disbiome	27388563
Human	Crohn's disease	Elevated	Disbiome	23060013
Human	Obesity	Reduced	Disbiome	29576948
Human	Systemic Lupus Erythematosus	Elevated	Disbiome	31883828
Human	Cystic fibrosis	Elevated	Disbiome	26492486
Human	Obesity	Elevated	Disbiome	18326589
Human	Rheumatoid arthritis	Elevated	Disbiome	30420263
Human	Ulcerative colitis	Elevated	Disbiome	23060013

Related Metabolites

Metabolic Reactions

Reactions

This table shows at most 10 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0024355	L-Tyrosine	Hydrogen Ion	Tyrosine-protein kinase ptk	Phosphorylation	RHEA	34755880
MMDBr0024368	L-Isoleucine	diphosphate	Isoleucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024408	alpha-Ketoglutarate	Carbon dioxide	Multifunctional 2-oxoglutarate metabolism enzyme	Dehydrogenation	RHEA	34755880
MMDBr0024460	S-Adenosylmethionine	S-Adenosylhomocysteine	Type II methyltransferase M.MthTI	Methylation	RHEA	34755880
MMDBr0024483	L-Glutamine	L-Glutamic acid	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	Amide group addition	RHEA	34755880
MMDBr0024493	NAD	Hydrogen Ion	Dihydrolipoyl dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024550	Acetyl-CoA	CoA	Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system	Dehydrogenation	RHEA	34755880
MMDBr0024559	Adenosine triphosphate	Hydrogen Ion	Histidine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024568	L-Glutamine	L-Glutamic acid	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	Amide group addition	RHEA	34755880
MMDBr0024586	L-Serine	Hydrogen Ion	Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein	Phosphorylation; Synthesis	RHEA	34755880

Genome Data

Genome Link

MMDBm0000423

Genome Length

2861667 bp

# Predicted Proteins

3010

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-28 03:47:42 UTC

Reference

PMID: 17704766

Source Links

GenBank

CP000253

MiMeDB ID	Organism	Strain	Serotype	Variant	NCBI Taxonomy	BaSyS2 Genome
MMDBm0002121	Staphylococcus aureus subsp. aureus ST398	ST398	-	-	523796	View
MMDBm0002195	Staphylococcus aureus subsp. aureus TW20	TW20	-	-	663951	View
MMDBm0002202	Staphylococcus aureus 04-02981	04-02981	-	-	703339	View
MMDBm0002555	Staphylococcus aureus subsp. aureus N315	N315	-	-	158879	View
MMDBm0002556	Staphylococcus aureus subsp. aureus Mu50	Mu50	-	-	158878	View
MMDBm0002557	Staphylococcus aureus subsp. aureus COL	COL	-	-	93062	View
MMDBm0002558	Staphylococcus aureus subsp. aureus MRSA252	MRSA252	-	-	282458	View
MMDBm0002559	Staphylococcus aureus subsp. aureus MSSA476	MSSA476	-	-	282459	View
MMDBm0002561	Staphylococcus aureus subsp. aureus MW2	MW2	-	-	196620	View
MMDBm0002565	Staphylococcus aureus RF122	RF122	-	-	273036	View
MMDBm0002566	Staphylococcus aureus subsp. aureus USA300FPR3757	USA300FPR3757	-	-	451515	View
MMDBm0002567	Staphylococcus aureus subsp. aureus NCTC 8325	NCTC 8325	-	-	93061	View
MMDBm0002568	Staphylococcus aureus subsp. aureus JH9	JH9	-	-	359786	View
MMDBm0002569	Staphylococcus aureus subsp. aureus JH1	JH1	-	-	359787	View
MMDBm0002570	Staphylococcus aureus subsp. aureus str. Newman	Newman	-	-	426430	View
MMDBm0002571	Staphylococcus aureus subsp. aureus Mu3	Mu3	-	-	418127	View
MMDBm0002572	Staphylococcus aureus subsp. aureus USA300TCH1516	USA300TCH1516	-	-	451516	View
MMDBm0002574	Staphylococcus aureus subsp. aureus ED98	ED98	-	-	681288	View
MMDBm0778392	Staphylococcus aureus subsp. aureus USA300	USA300	-	-	367830	View
MMDBm0778393	Staphylococcus aureus subsp. aureus USA300_TCH959	USA300_TCH959	-	-	450394	View