| MMDBm0000027 | Bacillus cytotoxicus NVH 391-98 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000028 | Bacillus halodurans C-125 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000076 | Bifidobacterium longum NCC2705 | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0000097 | Brevibacillus brevis NBRC 100599 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000109 | Clostridioides difficile 630 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000114 | Clostridium acetobutylicum ATCC 824 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000116 | Clostridium beijerinckii NCIMB 8052 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000120 | Clostridium botulinum A str. ATCC 19397 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000132 | Clostridium perfringens ATCC 13124 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000160 | Escherichia coli | Eubacteria | Proteobacteria | Human | Unknown | ECMDB |
| MMDBm0000162 | Escherichia coli CFT073 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000167 | Escherichia coli SMS-3-5 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000169 | Escherichia coli UTI89 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000171 | Eubacterium eligens ATCC 27750 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000173 | Eubacterium rectale ATCC 33656 | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000198 | Lachnoclostridium phytofermentans ISDg | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000329 | Thermus thermophilus | Eubacteria | Deinococcus-thermus | Not Available | Not Available | RHEA |
| MMDBm0000368 | Shigella flexneri | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000460 | Bacillus anthracis | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0001172 | Acidithiobacillus ferrooxidans ATCC 23270 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001205 | Alcanivorax borkumensis SK2 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001212 | Alkalilimnicola ehrlichii MLHE-1 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001213 | Alkaliphilus metalliredigens QYMF | Eubacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0001214 | Alkaliphilus oremlandii OhILAs | Eubacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0001230 | Anoxybacillus flavithermus WK1 | Eubacteria | Firmicutes | Not Available | Not Available | RHEA |
