| MMDBm0000028 | Bacillus halodurans C-125 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000160 | Escherichia coli | Eubacteria | Proteobacteria | Human | Unknown | ECMDB |
| MMDBm0000162 | Escherichia coli CFT073 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000274 | Streptococcus salivarius | Eubacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0000340 | Azotobacter vinelandii | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0000351 | Acinetobacter calcoaceticus | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0000523 | Mycobacterium avium | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0000584 | Candida albicans | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0000585 | Candida tropicalis | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0001231 | Aquifex aeolicus VF5 | Eubacteria | Aquificae | Not Available | Not Available | RHEA |
| MMDBm0001248 | Bacillus subtilis subsp. subtilis str. 168 | Eubacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0001308 | Bradyrhizobium japonicum USDA 110 | Eubacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001484 | Corynebacterium jeikeium K411 | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
| MMDBm0001485 | Corynebacterium glutamicum ATCC 13032 | Eubacteria | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0001486 | Corynebacterium efficiens YS-314 | Eubacteria | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0001495 | Coxiella burnetii RSA 493 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001524 | Deinococcus radiodurans R1 | Eubacteria | Deinococcus-thermus | Not Available | Not Available | RHEA |
| MMDBm0001619 | Francisella tularensis subsp. holarctica LVS | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001673 | Haloferax volcanii DS2 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001685 | Helicobacter pylori 26695 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001686 | Helicobacter pylori J99 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001769 | Legionella pneumophila subsp. pneumophila str. Philadelphia 1 | Eubacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001818 | Methanocaldococcus jannaschii DSM 2661 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001880 | Mycobacterium tuberculosis H37Rv | Eubacteria | Actinobacteria | Human | Not Available | RHEA |
