| MMDBm0000032 | Bacillus timonensis 10403023 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000036 | Bacteroides caccae | Eubacteria | Bacteroidetes | Human Feces | Not Available | VMH |
| MMDBm0000038 | Bacteroides cellulosilyticus | Eubacteria | Bacteroidetes | Human Feces | Not Available | VMH |
| MMDBm0000043 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Human Feces | Not Available | VMH |
| MMDBm0000046 | Bacteroides fragilis NCTC 9343 | Eubacteria | Bacteroidetes | Human | Metabolic reconstruction | VMH |
| MMDBm0000049 | Bacteroides ovatus | Eubacteria | Bacteroidetes | Human Feces | Not Available | VMH |
| MMDBm0000052 | Bacteroides stercoris | Eubacteria | Bacteroidetes | Human Feces | Not Available | VMH |
| MMDBm0000053 | Bacteroides stercoris ATCC 43183 | Eubacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000054 | Bacteroides thetaiotaomicron | Eubacteria | Bacteroidetes | Human Feces | Not Available | VMH |
| MMDBm0000055 | Bacteroides thetaiotaomicron VPI-5482 | Eubacteria | Bacteroidetes | Human | Metabolic reconstruction | VMH |
| MMDBm0000056 | Bacteroides vulgatus | Eubacteria | Bacteroidetes | Human Feces | Not Available | VMH |
| MMDBm0000057 | Bacteroides vulgatus ATCC 8482 | Eubacteria | Bacteroidetes | Human | Metabolic reconstruction | VMH |
| MMDBm0000061 | Bifidobacterium Bifidum | Eubacteria | Actinobacteria | Human Feces | Not Available | VMH |
| MMDBm0000062 | Bifidobacterium adolescentis | Eubacteria | Actinobacteria | Human Feces | Not Available | VMH |
| MMDBm0000064 | Bifidobacterium adolescentis ATCC 15703 | Eubacteria | Actinobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000067 | Bifidobacterium bifidum PRL2010 | Eubacteria | Actinobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000074 | Bifidobacterium longum | Eubacteria | Actinobacteria | Human | Not Available | VMH |
| MMDBm0000077 | Bifidobacterium longum subsp. infantis | Eubacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000079 | Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 | Eubacteria | Actinobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000098 | Butyrivibrio fibrisolvens | Eubacteria | Firmicutes | Not Available | Not Available | VMH |
| MMDBm0000136 | Clostridium saccharoperbutylacetonicum N1-4(HMT) | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000141 | Collinsella aerofaciens | Eubacteria | Actinobacteria | Human Feces | Not Available | VMH |
| MMDBm0000173 | Eubacterium rectale ATCC 33656 | Eubacteria | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000175 | Eubacterium rectale M104/1 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000179 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Human Feces | Not Available | VMH |
