MiMeDB: Thermococcus sibiricus MM 739 (MMDBm0002693)

Microbe Identification

Microbe name

Thermococcus sibiricus MM 739

NCBI Taxonomy ID

604354

Microbe Taxonomy

Superkingdom

Archaea

Kingdom

Archaea

Phylum

Euryarchaeota

Class

Thermococci

Order

Thermococcales

Family

Thermococcaceae

Genus

Thermococcus

Species

sibiricus

Strain

Microbe Properties

Gram staining properties

Positive

Shape

Cocci

Mobility

Yes

Flagellar presence

Number of membranes

Oxygen preference

Anaerobic

Optimal temperature

Not Available

Temperature range

Hyperthermophilic

Habitat

Hot spring

Biotic relationship

Free living

Cell arrangement

Not Available

Sporulation

Nonsporulating

Metabolism

Not Available

Energy source

Organotroph

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Gut	Feces	Expected but not quantified

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0012883	D-Glyceraldehyde 3-phosphate	(2R)-3-phospho-glyceroyl phosphate	Glyceraldehyde-3-phosphate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0012884	D-Glyceraldehyde 3-phosphate	(2R)-3-phospho-glyceroyl phosphate	Glyceraldehyde-3-phosphate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0012889	Pyroglutamic acid	L-Glutamic acid	5-oxoprolinase	Hydrolysis	RHEA	34755880
MMDBr0012899	Guanosine triphosphate	Guanosine diphosphate	Phosphoenolpyruvate carboxykinase [GTP]	Phosphorylation	RHEA	34755880
MMDBr0013012	D-Glucose	aldehydo-D-glucose 6-phosphate	ADP-dependent glucose/glucosamine kinase	Phosphorylation	RHEA	34755880
MMDBr0013027	CMP	CDP	Cytidylate kinase	Phosphorylation	RHEA	34755880
MMDBr0013173	Uridine 5'-monophosphate	Phosphoribosyl pyrophosphate	Bifunctional protein PyrR	Transfer of phosphoribosyl group	RHEA	34755880
MMDBr0013226	5-Thymidylic acid	dTDP	Putative thymidylate kinase	Phosphorylation	RHEA	34755880
MMDBr0013309	Phosphoglycolic acid	Glycolic acid	Phosphoglycolate phosphatase	Dephosphorylation	RHEA	34755880
MMDBr0013357	(2R)-3-phosphoglyceric acid	(2R)-3-phospho-glyceroyl phosphate	Phosphoglycerate kinase	Phosphorylation	RHEA	34755880
MMDBr0013458	Guanosine triphosphate	Guanosine diphosphate	Adenylosuccinate synthetase	Synthesis	RHEA	34755880
MMDBr0013613	(R)-mevalonate	Mevalonic acid-5P	Mevalonate kinase erg12	Phosphorylation	RHEA	34755880
MMDBr0013670	L-Arginine	Agmatine	Pyruvoyl-dependent arginine decarboxylase AaxB	Decarboxylation	RHEA	34755880
MMDBr0013728	(2E,6E,10E)-geranylgeranyl diphosphate	2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate	Digeranylgeranylglyceryl phosphate synthase	Synthesis	RHEA	34755880
MMDBr0014024	S-Adenosylhomocysteine	S-inosyl-L-homocysteine	5'-deoxyadenosine deaminase	Deamination	RHEA	34755880
MMDBr0014102	Sn-Glycerol-1-phosphate	Dihydroxyacetone phosphate	Glycerol-1-phosphate dehydrogenase [NAD(P)+]	Dehydrogenation	RHEA	34755880
MMDBr0014103	Sn-Glycerol-1-phosphate	Dihydroxyacetone phosphate	Glycerol-1-phosphate dehydrogenase [NAD(P)+]	Dehydrogenation	RHEA	34755880
MMDBr0014229	5-Amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate	(2S)-2-[5-Amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinic acid	Phosphoribosylaminoimidazole-succinocarboxamide synthase	Synthesis	RHEA	34755880
MMDBr0014236	dCTP	Deoxyuridine triphosphate	dCTP deaminase	Deamination	RHEA	34755880
MMDBr0014311	Isopentenyl pyrophosphate	Dimethylallylpyrophosphate	Isopentenyl-diphosphate Delta-isomerase	Isomerization	RHEA	34755880
MMDBr0014327	(2E,6E,10E)-geranylgeranyl diphosphate	sn-3-O-(geranylgeranyl)glycerol 1-phosphate	Geranylgeranylglyceryl phosphate synthase	Synthesis	RHEA	34755880
MMDBr0014447	Uridine 5'-monophosphate	Uridine 5'-diphosphate	UMP-CMP kinase	Phosphorylation	RHEA	34755880
MMDBr0014505	5'-Methylthioadenosine	S-methyl-5'-thioinosine	5'-deoxyadenosine deaminase	Deamination	RHEA	34755880
MMDBr0014514	dCMP	dCDP	Cytidylate kinase	Phosphorylation	RHEA	34755880
MMDBr0015325	Guanosine triphosphate	Mo-molybdopterin guanine dinucleotide	Molybdenum cofactor guanylyltransferase	Synthesis	RHEA	34755880
MMDBr0015548	CMP	Ribose 1,5-bisphosphate	AMP phosphorylase 1	Phosphorylation	RHEA	34755880
MMDBr0015549	Uridine 5'-monophosphate	Ribose 1,5-bisphosphate	AMP phosphorylase 1	Phosphorylation	RHEA	34755880
MMDBr0015852	(2R)-2,3-bisphosphoglyceric acid	cyclic (2R)-2,3-bisphosphoglyceric acid	Cyclic 2,3-diphosphoglycerate synthetase	Synthesis	RHEA	34755880
MMDBr0017170	Glucosamine	D-glucosamine 6-phosphate	ADP-dependent glucose/glucosamine kinase	Phosphorylation	RHEA	34755880
MMDBr0017879	L-Glutamine	2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidine	Phosphoribosylformylglycinamidine synthase	Synthesis	RHEA	34755880
MMDBr0024345	L-Tyrosine	Hydrogen Ion	Tyrosine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024411	L-Serine	Hydrogen Ion	Type-2 serine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024424	S-Adenosylmethionine	S-Adenosylhomocysteine	Protein-L-isoaspartate O-methyltransferase	Methylation	RHEA	34755880
MMDBr0024522	Glycine	diphosphate	Glycine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024568	L-Glutamine	L-Glutamic acid	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	Amide group addition	RHEA	34755880
MMDBr0024628	L-Phenylalanine	Hydrogen Ion	Phenylalanine--tRNA ligase beta subunit	Ligation	RHEA	34755880
MMDBr0024656	L-Arginine	diphosphate	Arginine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024759	Adenosine triphosphate	diphosphate	RNA 3'-terminal phosphate cyclase	Cycle formation	RHEA	34755880
MMDBr0024763	L-Tryptophan	Hydrogen Ion	Tryptophan--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024787	L-Threonine	Hydrogen Ion	Threonine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024962	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA(Phe) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-N(4))-methyltransferase	Methylation	RHEA	34755880
MMDBr0024971	L-Threonylcarbamoyladenylate	Hydrogen Ion	tRNA N6-adenosine threonylcarbamoyltransferase	Synthesis	RHEA	34755880
MMDBr0025060	L-Serine	Hydrogen Ion	Type-2 serine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0025151	Agmatine	Hydrogen Ion	tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS	Synthesis	RHEA	34755880
MMDBr0025154	Water	Niacinamide	NAD-dependent protein deacetylase	Deacetylation	RHEA	34755880
MMDBr0025242	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA small subunit methyltransferase Nep1	Methylation	RHEA	34755880
MMDBr0025273	Water	Niacinamide	NAD-dependent protein deacylase	Deacylation	RHEA	34755880

Genome Data

Genome Link

Not Available

Genome Length

Not Available

# Predicted Proteins

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

Reference

PMID: 17704766

Source Links

GenBank