| MMDBm0001187 | Acinetobacter baumannii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001184 | Acinetobacter baumannii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001170 | Acidiphilium cryptum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001180 | Acidovorax ebreus | Eubacteria | Proteobacteria | Facultative |
| MMDBm0001179 | Acidovorax sp. JS42 | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001200 | Agrobacterium tumefaciens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001202 | Agrobacterium tumefaciens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001209 | Vibrio fischeri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001210 | Vibrio fischeri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001211 | Aliivibrio salmonicida | Eubacteria | Proteobacteria | Facultative |
| MMDBm0000028 | Bacillus halodurans | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0001231 | Aquifex aeolicus | Eubacteria | Aquificae | Aerobe |
| MMDBm0001268 | Bacillus anthracis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0001267 | Bacillus anthracis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0001258 | Bacillus thuringiensis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0000460 | Bacillus anthracis | Eubacteria | Firmicutes | |
| MMDBm0001263 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001249 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001264 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001266 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001262 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000026 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000027 | Bacillus cytotoxicus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001265 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001252 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001256 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001254 | Bacillus thuringiensis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0001255 | Bacillus licheniformis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0001261 | Bacillus weihenstephanensis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001260 | Bacillus pumilus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001248 | Bacillus subtilis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0001259 | amyloliquefaciens | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001293 | Bordetella petrii | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0001966 | Bordetella pertussis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001309 | Bradyrhizobium sp. ORS278 | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001319 | Brucella abortus | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0001315 | Brucella abortus | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0001314 | Brucella abortus | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0001320 | Brucella melitensis | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0001312 | Brucella melitensis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001316 | Brucella ovis | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0001318 | Brucella suis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001313 | Brucella suis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001346 | Burkholderia ambifaria | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0001335 | Burkholderia cenocepacia | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0001345 | Burkholderia cenocepacia | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0001337 | Burkholderia cenocepacia | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0001336 | Burkholderia ambifaria | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0001332 | Burkholderia sp. 383 | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0001343 | Burkholderia vietnamiensis | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0001372 | Campylobacter jejuni | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0001369 | Campylobacter jejuni | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0001367 | Campylobacter jejuni | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0001368 | Campylobacter jejuni | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0001971 | Campylobacter jejuni | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0001406 | Carboxydothermus hydrogenoformans | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002439 | Rhodobacter sphaeroides | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0456231 | Rhodobacter sphaeroides | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0001420 | Chelativorans sp. BNC1 | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001446 | Chloroflexus aggregans | Eubacteria | Chloroflexi | Facultative |
| MMDBm0000132 | Clostridium perfringens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001454 | Clostridium perfringens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001477 | Clostridium perfringens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001506 | Cupriavidus metallidurans | Eubacteria | Proteobacteria | Facultative |
| MMDBm0001504 | Ralstonia eutropha | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0001505 | Ralstonia eutropha | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0001507 | Cupriavidus taiwanensis | Eubacteria | Proteobacteria | Facultative |
| MMDBm0001524 | Deinococcus radiodurans | Eubacteria | Deinococcus-thermus | Aerobe |
| MMDBm0001538 | Desulfococcus oleovorans | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0542442 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000162 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0541555 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001615 | Flavobacterium johnsoniae | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0001638 | Geobacillus sp. WCH70 | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001659 | Haemophilus influenzae | Eubacteria | Proteobacteria | Aerobe; facultative anaerobe |
| MMDBm0001658 | Haemophilus influenzae | Eubacteria | Proteobacteria | Aerobe; facultative anaerobe |
| MMDBm0001705 | Haemophilus somnus | Eubacteria | Proteobacteria | Aerobe; facultative anaerobe |
| MMDBm0001691 | Helicobacter pylori | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0001690 | Helicobacter pylori | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0001687 | Helicobacter pylori | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001686 | Helicobacter pylori | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001685 | Helicobacter pylori | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001706 | Haemophilus somnus | Eubacteria | Proteobacteria | Aerobe; facultative anaerobe |
| MMDBm0001708 | Hydrogenobaculum sp. Y04AAS1 | Eubacteria | Aquificae | Aerobe |
| MMDBm0001778 | Leptothrix cholodnii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001284 | succiniciproducens | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0001843 | Methanosarcina acetivorans | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001818 | Methanocaldococcus jannaschii | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001844 | Methanosarcina mazei | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001854 | Methylibium petroleiphilum | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0001849 | Methanothermobacter thermautotrophicus | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001887 | Mycobacterium avium | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001884 | Mycobacterium bovis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001891 | Mycobacterium bovis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001899 | Mycobacterium bovis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001897 | Mycobacterium marinum | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001883 | Mycobacterium avium | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001894 | Mycobacterium tuberculosis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001882 | Mycobacterium tuberculosis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001880 | Mycobacterium tuberculosis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001885 | Mycobacterium ulcerans | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001890 | Mycobacterium vanbaalenii | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001926 | Natronomonas pharaonis | Archaea | Euryarchaeota | Aerobe |
| MMDBm0001924 | Natranaerobius thermophilus | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0001930 | Neisseria meningitidis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001929 | Neisseria meningitidis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001931 | Neisseria meningitidis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001941 | Nitrobacter hamburgensis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001959 | Nostoc sp. PCC 7120 | Eubacteria | Cyanobacteria | Aerobe |
| MMDBm0001998 | Opitutus terrae | Eubacteria | Verrucomicrobia | Anaerobe |
| MMDBm0002345 | Pasteurella multocida | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002356 | Pelotomaculum thermopropionicum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805040 | Peptoclostridium acidaminophilum | Eubacteria | Firmicutes | |
| MMDBm0002360 | Photobacterium profundum | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002367 | Polynucleobacter necessarius | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002395 | Pseudomonas syringae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002404 | Pseudomonas aeruginosa | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002407 | Pseudomonas aeruginosa | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002399 | Pseudomonas aeruginosa | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002391 | Pseudomonas aeruginosa | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002398 | Pseudomonas entomophila | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002402 | Pseudomonas fluorescens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002401 | mendocina | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002403 | Pseudomonas putida | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002397 | Pseudomonas fluorescens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002405 | Pseudomonas putida | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002392 | Pseudomonas putida | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000334 | Pseudomonas putida | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002394 | Pseudomonas syringae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002396 | Pseudomonas syringae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002423 | Pyrococcus abyssi | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0002425 | Pyrococcus furiosus | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0002424 | Pyrococcus horikoshii | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0002430 | Ralstonia pickettii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002429 | Ralstonia solanacearum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002435 | Rhizobium leguminosarum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001810 | Mesorhizobium japonicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002437 | Rhizobium leguminosarum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002538 | Sinorhizobium meliloti | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002448 | Rhodopirellula baltica | Eubacteria | Planctomycetes | Aerobe |
| MMDBm0000411 | Rhodobacter capsulatus | Eubacteria | Proteobacteria | |
| MMDBm0001204 | Rhodoferax ferrireducens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002450 | Rhodopseudomonas palustris | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0002452 | Rhodopseudomonas palustris | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0002440 | Rhodobacter sphaeroides | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0550758 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002492 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002506 | Serratia proteamaculans | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002515 | Shewanella amazonensis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002527 | Shewanella baltica | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0002517 | Shewanella baltica | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0002520 | Shewanella baltica | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0002523 | Shewanella baltica | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0002513 | Shewanella frigidimarina | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002524 | Shewanella halifaxensis | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002518 | Shewanella loihica | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002509 | Shewanella oneidensis | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002522 | Shewanella pealeana | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002519 | Shewanella putrefaciens | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002526 | Shewanella piezotolerans | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002514 | Shewanella sp. ANA-3 | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002521 | Shewanella sediminis | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002512 | Shewanella sp. MR-4 | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002511 | Shewanella sp. MR-7 | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002516 | Shewanella sp. W3-18-1 | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002525 | Shewanella woodyi | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002073 | Rhizobium sp. NGR234 | Eubacteria | Proteobacteria | |
| MMDBm0002571 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002569 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0778392 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002567 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002568 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002565 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002557 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002570 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002556 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002555 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002558 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002559 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002572 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002561 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002573 | Staphylococcus carnosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002560 | Staphylococcus epidermidis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002562 | Staphylococcus epidermidis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002563 | Staphylococcus haemolyticus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002564 | Staphylococcus saprophyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0002654 | Sulfurimonas denitrificans | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0002352 | Pelobacter carbinolicus | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0002663 | Synechococcus elongatus | Eubacteria | Cyanobacteria | Facultative |
| MMDBm0002660 | Synechococcus elongatus | Eubacteria | Cyanobacteria | Aerobe |
| MMDBm0002692 | Thermococcus gammatolerans | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0002690 | Thermococcus kodakarensis | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0002693 | Thermococcus sibiricus | Archaea | Euryarchaeota | Anaerobic |
| MMDBm0001220 | Anabaena variabilis | Eubacteria | Cyanobacteria | Aerobe |
| MMDBm0002745 | Vibrio splendidus | Eubacteria | Proteobacteria | Facultative |
| MMDBm0610847 | Vibrio campbellii | Eubacteria | Proteobacteria | |
| MMDBm0002739 | Vibrio cholerae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002741 | Vibrio parahaemolyticus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002740 | Vibrio vulnificus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002742 | Vibrio vulnificus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002764 | Xanthomonas campestris | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002783 | pseudotuberculosis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002780 | Yersinia pestis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002786 | pseudotuberculosis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562461 | Yersinia pestis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002784 | Yersinia pestis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002779 | Yersinia pestis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002782 | Yersinia pestis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002785 | pseudotuberculosis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0882069 | Synechocystis sp. PCC 6803 | Eubacteria | | |
| MMDBm0882061 | Haloferax mediterranei | Archaea | | |