| MMDBm0000022 | Anaerostipes hadrus | Eubacteria | Firmicutes | Human Feces | Microbial culture | Not Available |
| MMDBm0000036 | Bacteroides caccae | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | Not Available |
| MMDBm0000038 | Bacteroides cellulosilyticus | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | Not Available |
| MMDBm0000042 | Bacteroides eggerthii | Eubacteria | Bacteroidetes | Human Stool | Microbial culture | Not Available |
| MMDBm0000043 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Human Feces | Not Available | VMH |
| MMDBm0000044 | Bacteroides fragilis 3_1_12 | Eubacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000045 | Bacteroides fragilis 638R | Eubacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000046 | Bacteroides fragilis NCTC 9343 | Eubacteria | Bacteroidetes | Human | Metabolic reconstruction | VMH |
| MMDBm0000047 | Bacteroides fragilis YCH46 | Eubacteria | Bacteroidetes | Human | Metabolic reconstruction | VMH |
| MMDBm0000049 | Bacteroides ovatus | Eubacteria | Bacteroidetes | Human Feces | Not Available | VMH |
| MMDBm0000052 | Bacteroides stercoris | Eubacteria | Bacteroidetes | Human Feces | Microbial culture | Not Available |
| MMDBm0000053 | Bacteroides stercoris ATCC 43183 | Eubacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000054 | Bacteroides thetaiotaomicron | Eubacteria | Bacteroidetes | Human Feces | Not Available | VMH |
| MMDBm0000055 | Bacteroides thetaiotaomicron VPI-5482 | Eubacteria | Bacteroidetes | Human | Metabolic reconstruction | VMH |
| MMDBm0000056 | Bacteroides vulgatus | Eubacteria | Bacteroidetes | Human Feces | Not Available | VMH |
| MMDBm0000057 | Bacteroides vulgatus ATCC 8482 | Eubacteria | Bacteroidetes | Human | Metabolic reconstruction | VMH |
| MMDBm0000062 | Bifidobacterium adolescentis | Eubacteria | Actinobacteria | Human Feces | Not Available | VMH |
| MMDBm0000064 | Bifidobacterium adolescentis ATCC 15703 | Eubacteria | Actinobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000088 | Bifidobacterium pseudolongum | Eubacteria | Actinobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0000089 | Bifidobacterium pseudolongum subsp. Pseudolongum DSM 20099 | Eubacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000090 | Bifidobacterium thermophilum RBL67 | Eubacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000098 | Butyrivibrio fibrisolvens | Eubacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0000141 | Collinsella aerofaciens | Eubacteria | Actinobacteria | Human Feces | Not Available | VMH |
| MMDBm0000173 | Eubacterium rectale ATCC 33656 | Eubacteria | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000175 | Eubacterium rectale M104/1 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
