| MMDBm0001166 | Achromobacter xylosoxidans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0480821 | Achromobacter xylosoxidans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0645212 | Acetomicrobium hydrogeniformans | Eubacteria | Synergistetes | |
| MMDBm0810288 | Anaerococcus hydrogenalis | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0000020 | Anaerococcus prevotii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0810309 | Anaerococcus vaginalis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0723927 | Atopobium minutum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0001243 | Atopobium parvulum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0723989 | Lancefieldella rimae | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0730668 | Bacillus atrophaeus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001257 | Bacillus clausii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730439 | Bacillus endophyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730452 | Bacillus flexus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730482 | Bacillus infantis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001255 | Bacillus licheniformis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0730692 | Bacillus mojavensis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730698 | Bacillus sonorensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001248 | Bacillus subtilis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0730891 | Bacillus thermoamylovorans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000032 | Bacillus timonensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000033 | Bacillus vallismortis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0802304 | Blautia producta | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000096 | Brevibacillus borstelensis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0663594 | Brevibacterium linens | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0663608 | Brevibacterium ravenspurgense | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0766462 | Brochothrix thermosphacta | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0798353 | Butyricicoccus pullicaecorum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0533412 | Citrobacter amalonaticus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000105 | Citrobacter freundii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0533435 | Citrobacter freundii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001450 | Citrobacter koseri | Eubacteria | Proteobacteria | Facultatively anaerobe |
| MMDBm0533439 | Citrobacter portucalensis | Eubacteria | Proteobacteria | |
| MMDBm0533444 | Citrobacter youngae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000107 | Cloacibacillus evryensis | Eubacteria | Synergistetes | Anaerobe |
| MMDBm0001146 | Clostridiales bacterium 1_7_47FAA | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0000116 | beijerinckii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802705 | Enterocloster bolteae | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000120 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001459 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001460 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000122 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802708 | Enterocloster citroniae | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000125 | Enterocloster clostridioformis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001470 | Clostridium difficile | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0804868 | Clostridioides difficile | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0804869 | Clostridioides difficile | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0000112 | Clostridioides difficile | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802892 | Clostridium hylemonae | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802992 | Lacrimispora indolis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802894 | Clostridium methoxybenzovorans | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798898 | Clostridium paraputrificum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802899 | Clostridium scindens | Eubacteria | Firmicutes | Aerotolerant |
| MMDBm0798974 | Clostridium tyrobutyricum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0724102 | Collinsella aerofaciens | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648901 | Corynebacterium ammoniagenes | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0001501 | Cronobacter sakazakii | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0802657 | Dorea longicatena | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000194 | Klebsiella aerogenes | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001574 | Enterobacter asburiae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534723 | Enterobacter cancerogenus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534735 | Enterobacter cloacae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534800 | Enterobacter hormaechei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534801 | Enterobacter hormaechei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001584 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001593 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001583 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0533123 | Atlantibacter hermannii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0543470 | Escherichia sp. 1_1_43 | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000160 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0543506 | Escherichia sp. 4_1_40B | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001614 | Finegoldia magna | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0416194 | Fusobacterium mortiferum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416260 | Fusobacterium ulcerans | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416261 | Fusobacterium varium | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0786510 | Granulicatella adiacens | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786514 | Granulicatella elegans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0544527 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0544444 | Klebsiella michiganensis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0544716 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001067 | Klebsiella variicola | Eubacteria | Proteobacteria | |
| MMDBm0792733 | Lactobacillus antri | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0792831 | Lactobacillus coryniformis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0792769 | Limosilactobacillus oris | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0790274 | Lacticaseibacillus paracasei | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0790389 | Lactiplantibacillus pentosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0533093 | Leminorella grimontii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0766514 | Listeria grayi | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0435884 | Methylobacterium mesophilicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001858 | Methylobacterium radiotolerans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002330 | Olsenella uli | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000228 | Paenibacillus daejeonensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0767930 | Paenibacillus graminis | Eubacteria | Firmicutes | |
| MMDBm0767965 | Paenibacillus lactis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0555709 | Pantoea agglomerans | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0558544 | Providencia rettgeri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0805654 | Pseudoflavonifractor capillosus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0801900 | Pseudoramibacter alactolyticus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0645329 | Pyramidobacter piscolens | Eubacteria | Synergistetes | Anaerobe |
| MMDBm0547370 | Raoultella planticola | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0461764 | Roseomonas mucosa | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002492 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002532 | Shigella dysenteriae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002232 | Shigella flexneri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002531 | Shigella sonnei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0808830 | Solobacterium moorei | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0779527 | Staphylococcus equorum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779602 | Staphylococcus xylosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779603 | Staphylococcus xylosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794401 | Streptococcus anginosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002632 | Streptococcus parauberis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0796207 | Streptococcus thoraltensis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002614 | Streptococcus uberis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0552405 | Trabulsiella guamensis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0552432 | Yokenella regensburgei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001052 | Clostridium saccharoperbutylacetonicum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0546994 | Kluyvera ascorbata | Eubacteria | Proteobacteria | Facultative anaerobe |