| MMDBm0001166 | Achromobacter xylosoxidans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001188 | Acinetobacter baumannii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002164 | Acinetobacter pittii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0572812 | Acinetobacter haemolyticus | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0572828 | Acinetobacter johnsonii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0572837 | Acinetobacter junii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0572852 | Acinetobacter lwoffii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000007 | Acinetobacter pittii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000008 | Acinetobacter radioresistens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0785760 | Aerococcus viridans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0516511 | Aeromonas caviae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001198 | Aeromonas hydrophila | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0000010 | Aeromonas jandaei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0516564 | Aeromonas media | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001199 | Aeromonas veronii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0422692 | Afipia birgiae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000012 | Agrobacterium tumefaciens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001274 | amyloliquefaciens | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000025 | Bacillus amyloliquefaciens | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730668 | Bacillus atrophaeus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001257 | Bacillus clausii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730439 | Bacillus endophyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730452 | Bacillus flexus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000028 | Bacillus halodurans | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0730482 | Bacillus infantis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001255 | Bacillus licheniformis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0001269 | Bacillus megaterium | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730692 | Bacillus mojavensis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730533 | Bacillus nealsonii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730698 | Bacillus sonorensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001248 | Bacillus subtilis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0730891 | Bacillus thermoamylovorans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730186 | Bacillus thuringiensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000032 | Bacillus timonensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000033 | Bacillus vallismortis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0665201 | Brachybacterium paraconglomeratum | Eubacteria | Actinobacteria | Aerobe, microaerophile |
| MMDBm0000095 | Bradyrhizobium elkanii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0423522 | Bradyrhizobium japonicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000096 | Brevibacillus borstelensis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000097 | Brevibacillus brevis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0766462 | Brochothrix thermosphacta | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0808543 | Bulleidia extructa | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0483496 | Burkholderia cepacia | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0399995 | Capnocytophaga sputigena | Eubacteria | Bacteroidetes | Facultative anaerobe |
| MMDBm0533363 | Cedecea davisae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0533412 | Citrobacter amalonaticus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000105 | Citrobacter freundii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0533435 | Citrobacter freundii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001450 | Citrobacter koseri | Eubacteria | Proteobacteria | Facultatively anaerobe |
| MMDBm0533439 | Citrobacter portucalensis | Eubacteria | Proteobacteria | |
| MMDBm0001146 | Clostridiales bacterium 1_7_47FAA | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0000114 | acetobutylicum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802699 | Enterocloster asparagiformis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798783 | Clostridium butyricum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798796 | Clostridium celatum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802145 | Ruminiclostridium cellobioparum | Eubacteria | Firmicutes | |
| MMDBm0801127 | Hungatella hathewayi | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0000132 | Clostridium perfringens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798939 | Clostridium sartagoforme | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0799100 | Clostridium sp. 7_2_43FAA | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798974 | Clostridium tyrobutyricum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001480 | testosteroni | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001501 | Cronobacter sakazakii | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0001529 | Delftia acidovorans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0397638 | Dyadobacter beijingensis | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0001564 | Dyadobacter fermentans | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0000194 | Klebsiella aerogenes | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001574 | Enterobacter asburiae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534723 | Enterobacter cancerogenus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534735 | Enterobacter cloacae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534800 | Enterobacter hormaechei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534801 | Enterobacter hormaechei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0786738 | Enterococcus asini | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786739 | Enterococcus avium | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786742 | Enterococcus caccae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786748 | Enterococcus casseliflavus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786754 | Enterococcus cecorum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786759 | Enterococcus dispar | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786760 | Enterococcus durans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0787501 | Enterococcus gallinarum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000157 | Enterococcus hirae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0787536 | Enterococcus phoeniculicola | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0540120 | Escherichia albertii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0540122 | Escherichia albertii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001596 | Escherichia fergusonii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0533123 | Atlantibacter hermannii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0784143 | Exiguobacterium aurantiacum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0416194 | Fusobacterium mortiferum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416260 | Fusobacterium ulcerans | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0650438 | Gordonia rubripertincta | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0650453 | Gordonia terrae | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0786510 | Granulicatella adiacens | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0786514 | Granulicatella elegans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0557502 | Hafnia alvei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0544527 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0544444 | Klebsiella michiganensis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0544716 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001067 | Klebsiella variicola | Eubacteria | Proteobacteria | |
| MMDBm0001756 | Lactobacillus amylolyticus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0792696 | Ligilactobacillus animalis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0792735 | Lactobacillus coleohominis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0792831 | Lactobacillus coryniformis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0792594 | Latilactobacillus curvatus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0790545 | Lactobacillus iners | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0790564 | Lactobacillus jensenii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0792746 | Lactobacillus mucosae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0792769 | Limosilactobacillus oris | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0790389 | Lactiplantibacillus pentosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0792753 | Lactobacillus vaginalis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002216 | Lactococcus garvieae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001762 | Lactococcus lactis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0793769 | Lactococcus raffinolactis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0533093 | Leminorella grimontii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0763254 | Lysinibacillus fusiformis | Eubacteria | Firmicutes | |
| MMDBm0001794 | Lysinibacillus sphaericus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001810 | Mesorhizobium japonicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0435884 | Methylobacterium mesophilicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001859 | Methylobacterium populi | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001858 | Methylobacterium radiotolerans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0505748 | Methyloversatilis universalis | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0000002 | Micromonospora aurantiaca | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0651046 | Mycobacterium avium | Eubacteria | Actinobacteria | Microaerophile |
| MMDBm0657325 | Mycolicibacterium fortuitum | Eubacteria | Actinobacteria | Microaerophile |
| MMDBm0764325 | Oceanobacillus picturae | Eubacteria | Firmicutes | |
| MMDBm0000227 | Paenibacillus barengoltzii | Eubacteria | Firmicutes | |
| MMDBm0000228 | Paenibacillus daejeonensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0767965 | Paenibacillus lactis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0555709 | Pantoea agglomerans | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0501221 | Parasutterella excrementihominis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002349 | Pediococcus pentosaceus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0563066 | Plesiomonas shigelloides | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580104 | Pseudomonas aeruginosa | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580255 | Pseudomonas alcaliphila | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002397 | Pseudomonas fluorescens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580586 | Pseudomonas monteilii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002403 | Pseudomonas putida | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002086 | Pseudomonas stutzeri | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000337 | Ralstonia pickettii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0547370 | Raoultella planticola | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0658815 | Rhodococcus hoagii | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0002444 | Rhodococcus erythropolis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0397948 | Rudanella lutea | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0639412 | Schlesneria paludicola | Eubacteria | Planctomycetes | Facultative anaerobe |
| MMDBm0559624 | Chania multitudinisentens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0560531 | Serratia liquefaciens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0560533 | Serratia marcescens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002532 | Shigella dysenteriae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002232 | Shigella flexneri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002531 | Shigella sonnei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0808830 | Solobacterium moorei | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0808831 | Solobacterium moorei | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002553 | Spirosoma linguale | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0774772 | Staphylococcus arlettae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002566 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000633 | Staphylococcus capitis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779391 | Staphylococcus capitis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779389 | Staphylococcus capitis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779406 | Staphylococcus cohnii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002562 | Staphylococcus epidermidis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779527 | Staphylococcus equorum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002563 | Staphylococcus haemolyticus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779540 | Staphylococcus hominis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779545 | Staphylococcus intermedius | Eubacteria | Firmicutes | |
| MMDBm0002575 | Staphylococcus lugdunensis | Eubacteria | Firmicutes | Aerobe; anaerobe |
| MMDBm0779566 | Staphylococcus pasteuri | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779569 | Staphylococcus pettenkoferi | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002564 | Staphylococcus saprophyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0774625 | Mammaliicoccus sciuri | Eubacteria | Firmicutes | |
| MMDBm0779587 | Staphylococcus simulans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0774633 | Mammaliicoccus vitulinus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779599 | Staphylococcus warneri | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779602 | Staphylococcus xylosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779603 | Staphylococcus xylosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002597 | Streptococcus agalactiae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794438 | Streptococcus australis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794415 | Streptococcus constellatus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794420 | Streptococcus constellatus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794454 | Streptococcus cristatus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794469 | Streptococcus dysgalactiae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002252 | Streptococcus gallolyticus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002607 | Streptococcus gordonii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794539 | Streptococcus infantis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794428 | Streptococcus intermedius | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794553 | Streptococcus lutetiensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794581 | Streptococcus mitis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002630 | Streptococcus oralis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794800 | Streptococcus parasanguinis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002632 | Streptococcus parauberis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794814 | Streptococcus peroris | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002610 | Streptococcus pneumoniae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002633 | Streptococcus pseudopneumoniae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002598 | Streptococcus pyogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0796207 | Streptococcus thoraltensis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002614 | Streptococcus uberis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0501236 | Sutterella parvirubra | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0552405 | Trabulsiella guamensis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0809729 | Veillonella atypica | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0809739 | Veillonella dispar | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0809759 | Veillonella seminalis | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0610806 | Vibrio fluvialis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0610808 | Vibrio fluvialis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0610810 | Vibrio fluvialis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002190 | Vibrio furnissii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000288 | Vibrio mimicus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002741 | Vibrio parahaemolyticus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0793461 | Weissella cibaria | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0793464 | Weissella confusa | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0562388 | Yersinia bercovieri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002781 | Yersinia enterocolitica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562438 | Yersinia frederiksenii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562450 | Yersinia kristensenii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002785 | pseudotuberculosis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562754 | Yersinia rohdei | Eubacteria | Proteobacteria | Obligate anaerobe |
| MMDBm0552432 | Yokenella regensburgei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000464 | Bacillus mycoides | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000767 | Bacillus pseudofirmus | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0001052 | Clostridium saccharoperbutylacetonicum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0546994 | Kluyvera ascorbata | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0772876 | Kurthia massiliensis | Eubacteria | Firmicutes | Aerobe |