| MMDBm0001231 | Aquifex aeolicus | Eubacteria | Aquificae | Aerobe |
| MMDBm0001248 | Bacillus subtilis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0001575 | Enterococcus faecalis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001762 | Lactococcus lactis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000523 | Mycobacterium avium | Eubacteria | Actinobacteria | Microaerophile |
| MMDBm0001884 | Mycobacterium bovis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001905 | Mycoplasma genitalium | Eubacteria | Tenericutes | Facultative anaerobe |
| MMDBm0001881 | Mycobacterium leprae | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001906 | Mycoplasma pneumoniae | Eubacteria | Tenericutes | Aerobe; anaerobe |
| MMDBm0001882 | Mycobacterium tuberculosis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001880 | Mycobacterium tuberculosis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0002141 | Rhodobacter capsulatus | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0002557 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002556 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002555 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002558 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002559 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002561 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002560 | Staphylococcus epidermidis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002562 | Staphylococcus epidermidis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002591 | Streptococcus agalactiae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002589 | Streptococcus agalactiae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002590 | Streptococcus mutans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002588 | Streptococcus pyogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002593 | Streptococcus pyogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002587 | Streptococcus pyogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002585 | Streptococcus pneumoniae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002592 | Streptococcus pyogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002586 | Streptococcus pneumoniae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000281 | Streptococcus thermophilus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002594 | Streptococcus thermophilus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001182 | Aciduliprofundum boonei | Archaea | Euryarchaeota | Anaerobic |
| MMDBm0001322 | Buchnera aphidicola | Eubacteria | Proteobacteria | |
| MMDBm0001323 | Buchnera aphidicola | Eubacteria | Proteobacteria | |
| MMDBm0000162 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0541555 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001612 | Ferroglobus placidus | Archaea | Euryarchaeota | Anaerobic |
| MMDBm0001658 | Haemophilus influenzae | Eubacteria | Proteobacteria | Aerobe; facultative anaerobe |
| MMDBm0001828 | Methanococcus aeolicus | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001843 | Methanosarcina acetivorans | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001956 | Methanocella arvoryzae | Archaea | Euryarchaeota | |
| MMDBm0001845 | Methanosarcina barkeri | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001824 | Methanococcoides burtonii | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001835 | evestigatum | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001819 | Methanocaldococcus fervens | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001852 | Methanothermus fervidus | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001848 | Methanospirillum hungatei | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001853 | Methanotorris igneus | Archaea | Euryarchaeota | Anaerobic |
| MMDBm0001822 | Methanocaldococcus infernus | Archaea | Euryarchaeota | Anaerobic |
| MMDBm0001818 | Methanocaldococcus jannaschii | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001838 | Methanopyrus kandleri | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001815 | Methanobacterium sp. AL-21 | Archaea | Euryarchaeota | |
| MMDBm0001833 | labreanum | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001826 | Methanococcus maripaludis | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001830 | Methanococcus maripaludis | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001829 | Methanococcus maripaludis | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001844 | Methanosarcina mazei | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001825 | Methanococcus maripaludis | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001836 | mahii | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001851 | Methanothermococcus okinawensis | Archaea | Euryarchaeota | Anaerobic |
| MMDBm0001847 | Methanosphaerula palustris | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001823 | Methanocella paludicola | Archaea | Euryarchaeota | Anaerobic |
| MMDBm0001816 | Methanobacterium sp. SWAN-1 | Archaea | Euryarchaeota | |
| MMDBm0001817 | Methanobrevibacter ruminantium | Not Available | Euryarchaeota | Anaerobe |
| MMDBm0001821 | Methanocaldococcus sp. FS406-22 | Archaea | Euryarchaeota | Anaerobic |
| MMDBm0001841 | Methanosaeta concilii | Archaea | Euryarchaeota | Anaerobic |
| MMDBm0001849 | Methanothermobacter thermautotrophicus | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001850 | Methanothermobacter marburgensis | Archaea | Euryarchaeota | Obligate anaerobe |
| MMDBm0001840 | Methanosaeta thermophila | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001831 | Methanococcus voltae | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001820 | Methanocaldococcus vulcanius | Archaea | Euryarchaeota | Anaerobic |
| MMDBm0001827 | Methanococcus vannielii | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001842 | Methanosalsum zhilinae | Archaea | Euryarchaeota | Anaerobic |
| MMDBm0002492 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0101577 | Schizosaccharomyces pombe | Fungi | Ascomycota | |
| MMDBm0000368 | Shigella flexneri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0610855 | Vibrio harveyi | Eubacteria | Proteobacteria | |
| MMDBm0098378 | Saccharomyces cerevisiae | Fungi | Ascomycota | |
| MMDBm0001786 | Listeria innocua | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001784 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001785 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001191 | Actinobacillus pleuropneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001192 | Actinobacillus succinogenes | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001198 | Aeromonas hydrophila | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0001197 | Aeromonas salmonicida | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001200 | Agrobacterium tumefaciens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001209 | Vibrio fischeri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001211 | Aliivibrio salmonicida | Eubacteria | Proteobacteria | Facultative |
| MMDBm0001308 | Bradyrhizobium japonicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001315 | Brucella abortus | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0000221 | Ochrobactrum anthropi | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001317 | Brucella canis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001312 | Brucella melitensis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001318 | Brucella suis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001313 | Brucella suis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001322 | Buchnera aphidicola | Eubacteria | Proteobacteria | |
| MMDBm0001323 | Buchnera aphidicola | Eubacteria | Proteobacteria | |
| MMDBm0001324 | Buchnera aphidicola | Eubacteria | Proteobacteria | |
| MMDBm0002439 | Rhodobacter sphaeroides | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0002441 | Rhodobacter sphaeroides | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0001420 | Chelativorans sp. BNC1 | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001449 | Chromohalobacter salexigens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001450 | Citrobacter koseri | Eubacteria | Proteobacteria | Facultatively anaerobe |
| MMDBm0001501 | Cronobacter sakazakii | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0001548 | Desulfovibrio alaskensis | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0001541 | Desulfotalea psychrophila | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0001547 | Desulfovibrio vulgaris | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0001549 | Desulfovibrio vulgaris | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0001588 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001594 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001598 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001600 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0542442 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001592 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001601 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001599 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001597 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001602 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001591 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001589 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001587 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001586 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000162 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001590 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0541555 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001595 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001593 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000167 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000169 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001565 | Edwardsiella ictaluri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001571 | Enterobacter sp. 638 | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001576 | tasmaniensis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001596 | Escherichia fergusonii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001654 | Gluconobacter oxydans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001969 | Haemophilus ducreyi | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0001658 | Haemophilus influenzae | Eubacteria | Proteobacteria | Aerobe; facultative anaerobe |
| MMDBm0001705 | Haemophilus somnus | Eubacteria | Proteobacteria | Aerobe; facultative anaerobe |
| MMDBm0001706 | Haemophilus somnus | Eubacteria | Proteobacteria | Aerobe; facultative anaerobe |
| MMDBm0001713 | Idiomarina loihiensis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001720 | Jannaschia sp. CCS1 | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001728 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001727 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001284 | succiniciproducens | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0001941 | Nitrobacter hamburgensis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001940 | Nitrobacter winogradskyi | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0002345 | Pasteurella multocida | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002346 | Pectobacterium atrosepticum | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0002347 | Pectobacterium carotovorum | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002361 | Photorhabdus luminescens | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002360 | Photobacterium profundum | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002387 | Proteus mirabilis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002434 | Rhizobium etli | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002435 | Rhizobium leguminosarum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001810 | Mesorhizobium japonicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002538 | Sinorhizobium meliloti | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002450 | Rhodopseudomonas palustris | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0002449 | Rhodopseudomonas palustris | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0002451 | Rhodopseudomonas palustris | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0002452 | Rhodopseudomonas palustris | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0002440 | Rhodobacter sphaeroides | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0002477 | Roseobacter denitrificans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002482 | Ruegeria pomeroyi | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002483 | Ruegeria sp. TM1040 | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002498 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0547793 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0548594 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002499 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0549171 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002500 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002496 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002495 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0550379 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002046 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0550426 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0550377 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0550587 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0550758 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002492 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002506 | Serratia proteamaculans | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002535 | Shigella boydii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002533 | Shigella boydii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002532 | Shigella dysenteriae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002534 | Shigella flexneri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000368 | Shigella flexneri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002531 | Shigella sonnei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002539 | Sinorhizobium medicae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001987 | Sodalis glossinidius | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0002745 | Vibrio splendidus | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002743 | Vibrio cholerae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0610847 | Vibrio campbellii | Eubacteria | Proteobacteria | |
| MMDBm0002739 | Vibrio cholerae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002746 | Vibrio cholerae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002741 | Vibrio parahaemolyticus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002740 | Vibrio vulnificus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002742 | Vibrio vulnificus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002781 | Yersinia enterocolitica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002783 | pseudotuberculosis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002780 | Yersinia pestis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002786 | pseudotuberculosis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562461 | Yersinia pestis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002784 | Yersinia pestis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002779 | Yersinia pestis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002782 | Yersinia pestis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002778 | pseudotuberculosis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002785 | pseudotuberculosis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001659 | Haemophilus influenzae | Eubacteria | Proteobacteria | Aerobe; facultative anaerobe |
| MMDBm0001659 | Haemophilus influenzae | Eubacteria | Proteobacteria | Aerobe; facultative anaerobe |