| MMDBm0001166 | Achromobacter xylosoxidans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0480821 | Achromobacter xylosoxidans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000003 | Acidaminococcus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000004 | Acidaminococcus intestini | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0808970 | Acidaminococcus intestini | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001188 | Acinetobacter baumannii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002164 | Acinetobacter pittii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0572812 | Acinetobacter haemolyticus | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0572828 | Acinetobacter johnsonii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0572852 | Acinetobacter lwoffii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000007 | Acinetobacter pittii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000008 | Acinetobacter radioresistens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001191 | Actinobacillus pleuropneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0645903 | Actinomyces naeslundii | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0645907 | Actinomyces oris | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0000009 | Adlercreutzia equolifaciens | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0516511 | Aeromonas caviae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001198 | Aeromonas hydrophila | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0000010 | Aeromonas jandaei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0516564 | Aeromonas media | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001199 | Aeromonas veronii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0422692 | Afipia birgiae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000011 | Aggregatibacter aphrophilus | Eubacteria | Proteobacteria | Facultative |
| MMDBm0000012 | Agrobacterium tumefaciens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000015 | Akkermansia muciniphila | Eubacteria | Verrucomicrobia | Anaerobe |
| MMDBm0000016 | Alcaligenes faecalis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0481922 | Alcaligenes faecalis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000018 | Alistipes finegoldii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394800 | Alistipes indistinctus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394805 | Alistipes onderdonkii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394807 | Alistipes putredinis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000019 | Alistipes shahii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393872 | Alloprevotella tannerae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0645212 | Acetomicrobium hydrogeniformans | Eubacteria | Synergistetes | |
| MMDBm0519667 | Anaerobiospirillum succiniciproducens | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0805428 | Anaerotruncus colihominis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001232 | Arcanobacterium haemolyticum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0000023 | Arcobacter butzleri | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0676734 | Arthrobacter castelli | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0723989 | Lancefieldella rimae | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0392079 | Bacteroides caccae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392086 | Bacteroides cellulosilyticus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000039 | Bacteroides clarus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0395105 | Phocaeicola coprocola | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0395106 | Phocaeicola coprophilus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0395112 | Phocaeicola dorei | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392093 | Bacteroides eggerthii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392098 | Bacteroides faecis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392100 | Bacteroides finegoldii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392101 | Bacteroides fluxus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000044 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000045 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000046 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000047 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392196 | Bacteroides intestinalis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0395113 | Phocaeicola massiliensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392206 | Bacteroides oleiciplenus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392208 | Bacteroides ovatus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0806589 | [Bacteroides] pectinophilus | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0395117 | Phocaeicola plebeius | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392215 | Bacteroides pyogenes | Eubacteria | Bacteroidetes | Obligate anaerobe |
| MMDBm0392224 | Bacteroides salyersiae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394980 | Parabacteroides sp. 2_1_7 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392277 | Bacteroides sp. 2_2_4 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392300 | Bacteroides sp. 4_1_36 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392301 | Bacteroides sp. 4_3_47FAA | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392307 | Bacteroides sp. 9_1_42FAA | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392456 | Bacteroides sp. D20 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000053 | Bacteroides stercoris | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000055 | thetaiotaomicron | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392237 | Bacteroides timonensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392239 | Bacteroides uniformis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0514239 | Campylobacter ureolyticus | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000057 | Bacteroides vulgatus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393007 | Barnesiella intestinihominis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0001279 | Bartonella quintana | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000064 | Bifidobacterium adolescentis | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0002290 | Bifidobacterium animalis | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648002 | Bifidobacterium animalis | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0001288 | Bifidobacterium animalis | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0002230 | Bifidobacterium animalis | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0001289 | Bifidobacterium animalis | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0002078 | Bifidobacterium animalis | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000066 | Bifidobacterium bifidum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000067 | Bifidobacterium bifidum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000068 | Bifidobacterium bifidum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648030 | Bifidobacterium boum | Eubacteria | Actinobacteria | Facultative anaerobe, air+co2 |
| MMDBm0648041 | Bifidobacterium breve | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648069 | Bifidobacterium coryneforme | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648074 | Bifidobacterium dentium | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000072 | Bifidobacterium catenulatum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000075 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648095 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000081 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000084 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000085 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000087 | Bifidobacterium mongoliense | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0000089 | Bifidobacterium pseudolongum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648159 | Bifidobacterium ruminantium | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648166 | Bifidobacterium scardovii | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0647984 | Bifidobacterium adolescentis | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0648174 | Bifidobacterium thermacidophilum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000090 | Bifidobacterium thermophilum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0509991 | Bilophila wadsworthia | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0662671 | Candidatus Blastococcus massiliensis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0482767 | Bordetella hinzii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0665201 | Brachybacterium paraconglomeratum | Eubacteria | Actinobacteria | Aerobe, microaerophile |
| MMDBm0641709 | Brachyspira pilosicoli | Eubacteria | Spirochaetes | Anaerobe |
| MMDBm0000095 | Bradyrhizobium elkanii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0423522 | Bradyrhizobium japonicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0663577 | Brevibacterium casei | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0663594 | Brevibacterium linens | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0663608 | Brevibacterium ravenspurgense | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0417443 | Brevundimonas bacteroides | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0417451 | Brevundimonas diminuta | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0483496 | Burkholderia cepacia | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0001144 | Burkholderiales bacterium 1_1_47 | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0393350 | Butyricimonas synergistica | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393353 | Butyricimonas virosa | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0002325 | Butyrivibrio fibrisolvens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0513907 | Campylobacter coli | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0001371 | Campylobacter concisus | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0001370 | Campylobacter curvus | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0000100 | Campylobacter fetus | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0513982 | Campylobacter gracilis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000101 | Campylobacter hominis | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0513988 | Campylobacter hyointestinalis | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0001368 | Campylobacter jejuni | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0514117 | Campylobacter jejuni | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0002282 | Campylobacter jejuni | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0001367 | Campylobacter jejuni | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0001373 | Campylobacter lari | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0514216 | Campylobacter rectus | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0514218 | Campylobacter showae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0514234 | Campylobacter upsaliensis | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0881918 | Candidatus Nitrososphaera gargensis | Not Available | Thaumarchaeota | Aerobe |
| MMDBm0399987 | Capnocytophaga granulosa | Eubacteria | Bacteroidetes | Facultative anaerobe |
| MMDBm0399995 | Capnocytophaga sputigena | Eubacteria | Bacteroidetes | Facultative anaerobe |
| MMDBm0533363 | Cedecea davisae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0685945 | Cellulosimicrobium cellulans | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0000882 | Cetobacterium somerae | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0533412 | Citrobacter amalonaticus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000105 | Citrobacter freundii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0533435 | Citrobacter freundii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001450 | Citrobacter koseri | Eubacteria | Proteobacteria | Facultatively anaerobe |
| MMDBm0533439 | Citrobacter portucalensis | Eubacteria | Proteobacteria | |
| MMDBm0533444 | Citrobacter youngae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000107 | Cloacibacillus evryensis | Eubacteria | Synergistetes | Anaerobe |
| MMDBm0802699 | Enterocloster asparagiformis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001480 | testosteroni | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0648901 | Corynebacterium ammoniagenes | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0648904 | Corynebacterium amycolatum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0001489 | Corynebacterium aurimucosum | Eubacteria | Actinobacteria | Facultative aerobe |
| MMDBm0648978 | Corynebacterium durum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0001490 | Corynebacterium kroppenstedtii5 | Eubacteria | Actinobacteria | Facultative aerobe |
| MMDBm0649080 | Corynebacterium propinquum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0649119 | Corynebacterium striatum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0649150 | Corynebacterium ureicelerivorans | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0001501 | Cronobacter sakazakii | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0667921 | Curtobacterium flaccumfaciens | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001529 | Delftia acidovorans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0665710 | Dermacoccus nishinomiyaensis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0510057 | Desulfovibrio desulfuricans | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0510126 | Desulfovibrio sp. 3_1_syn3 | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0809578 | Dialister invisus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0809587 | Dialister succinatiphilus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0649955 | Dietzia cinnamea | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0397638 | Dyadobacter beijingensis | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0001564 | Dyadobacter fermentans | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0000148 | Dysgonomonas gadei | Eubacteria | Bacteroidetes | Facultative anaerobe |
| MMDBm0557462 | Edwardsiella tarda | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002181 | Edwardsiella tarda | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000150 | Eggerthella lenta | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000151 | Eggerthella sp. YY7918 | Eubacteria | Actinobacteria | Nanaerobe |
| MMDBm0503548 | Eikenella corrodens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000194 | Klebsiella aerogenes | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001574 | Enterobacter asburiae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534723 | Enterobacter cancerogenus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534735 | Enterobacter cloacae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534800 | Enterobacter hormaechei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0534801 | Enterobacter hormaechei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0553036 | Enterobacteriaceae bacterium 9_2_54FAA | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0540120 | Escherichia albertii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0540122 | Escherichia albertii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001584 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001593 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001583 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001596 | Escherichia fergusonii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0533123 | Atlantibacter hermannii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0543470 | Escherichia sp. 1_1_43 | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000160 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0543506 | Escherichia sp. 4_1_40B | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000182 | Faecalitalea cylindroides | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0802216 | Anaerobutyricum hallii | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0416185 | Fusobacterium gonidiaformans | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416186 | Fusobacterium gonidiaformans | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416194 | Fusobacterium mortiferum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416200 | Fusobacterium necrophorum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416223 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416225 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416228 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0000185 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416237 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416238 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416239 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416251 | Fusobacterium periodonticum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416252 | Fusobacterium periodonticum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416256 | Fusobacterium russii | Eubacteria | Fusobacteria | Microaerophile |
| MMDBm0416224 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416260 | Fusobacterium ulcerans | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416261 | Fusobacterium varium | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0650438 | Gordonia rubripertincta | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0650453 | Gordonia terrae | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0650454 | Gordonia terrae | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0609478 | Grimontia hollisae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0570882 | Haemophilus haemolyticus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002186 | Haemophilus influenzae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000190 | Haemophilus parainfluenzae | Eubacteria | Proteobacteria | Aerobe; facultative anaerobe |
| MMDBm0570936 | Haemophilus sputorum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0557502 | Hafnia alvei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0544527 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0881919 | Halococcus morrhuae | Not Available | Euryarchaeota | Aerobe |
| MMDBm0515041 | Helicobacter bilis | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0515049 | Helicobacter canadensis | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0515057 | Helicobacter cinaedi | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0515086 | Helicobacter pullorum | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0001685 | Helicobacter pylori | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0515554 | Helicobacter winghamensis | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0503626 | Kingella oralis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0544444 | Klebsiella michiganensis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0544716 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001067 | Klebsiella variicola | Eubacteria | Proteobacteria | |
| MMDBm0682673 | Kocuria palustris | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001729 | Kocuria rhizophila | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001732 | Kytococcus sedentarius | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001766 | Laribacter hongkongensis | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0491302 | Lautropia mirabilis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0533093 | Leminorella grimontii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001779 | Leptotrichia buccalis | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0809098 | Megamonas funiformis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000216 | Megamonas hypermegale | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002107 | Megasphaera elsdenii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001810 | Mesorhizobium japonicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001817 | Methanobrevibacter ruminantium | Not Available | Euryarchaeota | Anaerobe |
| MMDBm0881917 | Methanomassiliicoccus luminyensis | Not Available | Euryarchaeota | Anaerobe |
| MMDBm0001846 | Methanosphaera stadtmanae | Not Available | Euryarchaeota | Anaerobe |
| MMDBm0435884 | Methylobacterium mesophilicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001859 | Methylobacterium populi | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001858 | Methylobacterium radiotolerans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0505748 | Methyloversatilis universalis | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0505746 | Methyloversatilis universalis | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0670563 | Microbacterium oleivorans | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0670570 | Microbacterium paraoxydans | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001872 | Micrococcus luteus | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0000002 | Micromonospora aurantiaca | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0809111 | Mitsuokella jalaludinii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0809112 | Mitsuokella multacida | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001876 | Mobiluncus curtisii | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0001878 | Moraxella catarrhalis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0557847 | Morganella morganii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0657325 | Mycolicibacterium fortuitum | Eubacteria | Actinobacteria | Microaerophile |
| MMDBm0503661 | Neisseria cinerea | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0503667 | Neisseria elongata | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0503672 | Neisseria flavescens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0503763 | Neisseria macacae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0503982 | Neisseria mucosa | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0503999 | Neisseria subflava | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0564358 | Nevskia ramosa | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0000221 | Ochrobactrum anthropi | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000222 | Ochrobactrum intermedium | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0393374 | Odoribacter laneus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000223 | Odoribacter splanchnicus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0723994 | Olsenella profusa | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0002330 | Olsenella uli | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0500745 | Oxalobacter formigenes | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0500746 | Oxalobacter formigenes | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0767930 | Paenibacillus graminis | Eubacteria | Firmicutes | |
| MMDBm0555709 | Pantoea agglomerans | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000232 | Parabacteroides distasonis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000233 | Parabacteroides goldsteinii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394966 | Parabacteroides gordonii | Eubacteria | Bacteroidetes | |
| MMDBm0394968 | Parabacteroides johnsonii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394970 | Parabacteroides merdae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0453897 | Paracoccus yeei | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0393900 | Paraprevotella clara | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393901 | Paraprevotella xylaniphila | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0501221 | Parasutterella excrementihominis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0809016 | Phascolarctobacterium succinatutens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0563066 | Plesiomonas shigelloides | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000241 | Porphyromonas asaccharolytica | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000242 | Porphyromonas endodontalis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0002369 | Porphyromonas gingivalis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393499 | Porphyromonas somerae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393500 | Porphyromonas uenonis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393926 | Prevotella bivia | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393929 | Prevotella brevis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393932 | Prevotella bryantii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393934 | Prevotella buccae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393945 | Prevotella corporis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393952 | Prevotella denticola | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000245 | Prevotella denticola | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393954 | Prevotella disiens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393955 | Prevotella disiens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000247 | Prevotella intermedia | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393977 | Prevotella loescheii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000248 | Prevotella melaninogenica | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393995 | Prevotella nanceiensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393997 | Prevotella nigrescens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394000 | Prevotella oralis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394012 | Prevotella pallens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000249 | Prevotella ruminicola | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394035 | Prevotella shahii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394038 | Prevotella stercorea | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394039 | Prevotella timonensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394040 | Prevotella timonensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394042 | Prevotella veroralis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0692554 | Acidipropionibacterium acidipropionici | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0002383 | Propionibacterium acnes | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0692716 | Cutibacterium avidum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0002385 | freudenreichii | Eubacteria | Actinobacteria | Facultative |
| MMDBm0692558 | Acidipropionibacterium jensenii | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0692584 | Pseudopropionibacterium propionicum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0558116 | Proteus mirabilis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0558122 | Proteus penneri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0558527 | Providencia alcalifaciens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0558544 | Providencia rettgeri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0558546 | Providencia rustigianii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0558550 | Providencia stuartii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0580104 | Pseudomonas aeruginosa | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580255 | Pseudomonas alcaliphila | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002397 | Pseudomonas fluorescens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580585 | Pseudomonas monteilii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580586 | Pseudomonas monteilii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580229 | Pseudomonas nitroreducens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580236 | Pseudomonas oleovorans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002403 | Pseudomonas putida | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002086 | Pseudomonas stutzeri | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0645329 | Pyramidobacter piscolens | Eubacteria | Synergistetes | Anaerobe |
| MMDBm0000337 | Ralstonia pickettii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0547370 | Raoultella planticola | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0658815 | Rhodococcus hoagii | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0002444 | Rhodococcus erythropolis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0658861 | Rhodococcus rhodochrous | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0461764 | Roseomonas mucosa | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0685377 | Rothia aeria | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0002480 | Rothia dentocariosa | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0002479 | Rothia mucilaginosa | Eubacteria | Actinobacteria | Microaerophile |
| MMDBm0397948 | Rudanella lutea | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0803014 | Ruminococcus gnavus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002492 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0639412 | Schlesneria paludicola | Eubacteria | Planctomycetes | Facultative anaerobe |
| MMDBm0809204 | Selenomonas ruminantium | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0559624 | Chania multitudinisentens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0560531 | Serratia liquefaciens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0560533 | Serratia marcescens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002532 | Shigella dysenteriae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002232 | Shigella flexneri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002531 | Shigella sonnei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0626640 | Silanimonas lenta | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0724468 | Slackia exigua | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0724473 | Slackia piriformis | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0471855 | Sphingomonas paucimobilis | Eubacteria | Proteobacteria | |
| MMDBm0002553 | Spirosoma linguale | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0626692 | Stenotrophomonas maltophilia | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0626730 | Stenotrophomonas rhizophila | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0519687 | Succinatimonas hippei | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0519718 | Succinivibrio dextrinosolvens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002641 | Sulfolobus solfataricus | Not Available | Crenarchaeota | Aerobe |
| MMDBm0501236 | Sutterella parvirubra | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0501242 | Sutterella wadsworthensis | Eubacteria | Proteobacteria | Microaerophile/ anaerobe |
| MMDBm0395050 | Tannerella forsythia | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0557387 | Tatumella ptyseos | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0552405 | Trabulsiella guamensis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0646445 | Trueperella pyogenes | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0646461 | Varibaculum cambriense | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0809739 | Veillonella dispar | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000287 | Veillonella parvula | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0809759 | Veillonella seminalis | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0809833 | Veillonella sp. 3_1_44 | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0809834 | Veillonella sp. 6_1_27 | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0610806 | Vibrio fluvialis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0610808 | Vibrio fluvialis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0610810 | Vibrio fluvialis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002190 | Vibrio furnissii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000288 | Vibrio mimicus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002741 | Vibrio parahaemolyticus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562388 | Yersinia bercovieri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002781 | Yersinia enterocolitica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562438 | Yersinia frederiksenii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562450 | Yersinia kristensenii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002785 | pseudotuberculosis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562754 | Yersinia rohdei | Eubacteria | Proteobacteria | Obligate anaerobe |
| MMDBm0552432 | Yokenella regensburgei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000246 | Prevotella intermedia | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000409 | Capnocytophaga ochracea | Eubacteria | Bacteroidetes | Aerobe; anaerobe |
| MMDBm0000513 | Actinomyces viscosus | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0000763 | Prevotella bryantii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000923 | Bacteroides nordii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0001040 | Bifidobacterium breve | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0001111 | Actinomyces graevenitzii | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0001123 | Porphyromonas uenonis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392190 | Bacteroides graminisolvens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393911 | Prevotella albensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393941 | Prevotella conceptionensis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393956 | Prevotella enoeca | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0546994 | Kluyvera ascorbata | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0658814 | Rhodococcus hoagii | Eubacteria | Actinobacteria | |
| MMDBm0670509 | Microbacterium gubbeenense | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0692719 | Cutibacterium granulosum | Eubacteria | Actinobacteria | |